Area of research
Molecular Biology · Pulmonary and Respiratory Medicine
Research interest
Research interests include Lung Cancer Treatments and Mutations, Genomics and Phylogenetic Studies, Gene expression and cancer classification, and Gut microbiota and health.
Metagenome analysis using the Kraken software suite
Fast and sensitive taxonomic assignment to metagenomic contigs
Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification
KrakenUniq: confident and fast metagenomics classification using unique k-mer counts
CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise
CMPK2 and BCL-G are associated with type 1 interferon–induced HIV restriction in humans
Bracken: estimating species abundance in metagenomics data
A review of methods and databases for metagenomic classification and assembly
Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system
The Lipid-Modifying Enzyme SMPDL3B Negatively Regulates Innate Immunity
Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML