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William F. DeGrado

University of California, San Francisco · US
Area of research
Molecular Biology · Immunology and Allergy
Research interest
Research interests include Protein Structure and Dynamics, Chemical Synthesis and Analysis, RNA and protein synthesis mechanisms, and Lipid Membrane Structure and Behavior.
h-index
124
citations
53,025
works
758
NIH funding
primary concept
email

Recent publications

De novo design of porphyrin-containing proteins as efficient and stereoselective catalysts
Science 2025cited by 37position: lastdoi
Resolving fibrosis by stimulating HSC-dependent extracellular matrix degradation
Science Translational Medicine 2025cited by 11position: middledoi
Rapid clearance of achiral small-molecule drugs using de novo-designed proteins and their cyclic and mirror-image variants
Nature Biomedical Engineering 2025cited by 6position: middledoi
High-throughput discovery of fluoroprobes that recognize amyloid fibril polymorphs
Nature Chemistry 2025cited by 5position: middledoi
ProBASS—a language model with sequence and structural features for predicting the effect of mutations on binding affinity
Bioinformatics 2025cited by 4position: middledoi
Patterning and folding of intestinal villi by active mesenchymal dewetting
Cell 2024cited by 78position: middledoi
De novo design of drug-binding proteins with predictable binding energy and specificity
Science 2024cited by 63position: lastdoi
De novo-designed transmembrane proteins bind and regulate a cytokine receptor
Nature Chemical Biology 2024cited by 21position: lastdoi
IL-13 and IL-17A activate β1 integrin through an NF-kB/Rho kinase/PIP5K1γ pathway to enhance force transmission in airway smooth muscle
Proceedings of the National Academy of Sciences 2024cited by 14position: middledoi
Zfp106 binds to G-quadruplex RNAs and inhibits RAN translation and formation of RNA foci caused by G4C2 repeats
Proceedings of the National Academy of Sciences 2024cited by 12position: middledoi
Stacked binding of a PET ligand to Alzheimer’s tau paired helical filaments
Nature Communications 2023cited by 65position: middledoi
A host defense peptide mimetic, brilacidin, potentiates caspofungin antifungal activity against human pathogenic fungi
Nature Communications 2023cited by 63position: middledoi
Transient water wires mediate selective proton transport in designed channel proteins
Nature Chemistry 2023cited by 63position: lastdoi
Soluble TREM2 inhibits secondary nucleation of Aβ fibrillization and enhances cellular uptake of fibrillar Aβ
Proceedings of the National Academy of Sciences 2022cited by 82position: lastdoi
Brilacidin, a COVID‐19 drug candidate, demonstrates broad‐spectrum antiviral activity against human coronaviruses OC43, 229E, and NL63 through targeting both the virus and the host cell
Journal of Medical Virology 2022cited by 48position: middledoi
SARS-CoV-2 Envelope Protein Forms Clustered Pentamers in Lipid Bilayers
Biochemistry 2022cited by 39position: middledoi
The CD3ζ adaptor structure determines functional differences between human and mouse CD16 Fc receptor signaling
The Journal of Experimental Medicine 2022cited by 35position: middledoi
Aβ and Tau Prions Causing Alzheimer’s Disease
Methods in molecular biology 2022cited by 23position: middledoi
Multiscale Simulation of an Influenza A M2 Channel Mutant Reveals Key Features of Its Markedly Different Proton Transport Behavior
Journal of the American Chemical Society 2022cited by 21position: middledoi
De novo metalloprotein design
Nature Reviews Chemistry 2021cited by 125position: lastdoi
Constructing ion channels from water-soluble α-helical barrels
Nature Chemistry 2021cited by 120position: middledoi
Inclusion of the C-Terminal Domain in the β-Sheet Core of Heparin-Fibrillized Three-Repeat Tau Protein Revealed by Solid-State Nuclear Magnetic Resonance Spectroscopy
Journal of the American Chemical Society 2021cited by 49position: middledoi
Rimantadine Binds to and Inhibits the Influenza A M2 Proton Channel without Enantiomeric Specificity
Biochemistry 2021cited by 22position: middledoi
<i>De novo</i>protein design, a retrospective
Quarterly Reviews of Biophysics 2020cited by 244position: lastdoi
A defined structural unit enables de novo design of small-molecule–binding proteins
Science 2020cited by 147position: lastdoi
Deep mutational scanning reveals the structural basis for α-synuclein activity
Nature Chemical Biology 2020cited by 98position: lastdoi
Allosteric cooperation in a de novo-designed two-domain protein
Proceedings of the National Academy of Sciences 2020cited by 54position: lastdoi
Platform to Discover Protease-Activated Antibiotics and Application to Siderophore–Antibiotic Conjugates
Journal of the American Chemical Society 2020cited by 48position: middledoi
<i>De Novo</i> Design, Solution Characterization, and Crystallographic Structure of an Abiological Mn–Porphyrin-Binding Protein Capable of Stabilizing a Mn(V) Species
Journal of the American Chemical Society 2020cited by 48position: lastdoi
X-ray Crystal Structures of the Influenza M2 Proton Channel Drug-Resistant V27A Mutant Bound to a Spiro-Adamantyl Amine Inhibitor Reveal the Mechanism of Adamantane Resistance
Biochemistry 2020cited by 39position: middledoi

Grants

Collaborative Research: De Novo Protein Constructs for Photosynthetic Energy Transduction
NSF2528384$426,0002025–2028PIRePORTER
NSF/MCB-BSF: De novo design of minimalistic light-switchable protein binding domains
NSF2306190$740,7972023–2027PIRePORTER
Collaborative Research: De Novo Protein Constructs for Photosynthetic Energy Transduction
NSF2108660$374,9942021–2024PIRePORTER
Collaborative Research: De novo Protein Constructs for Photosynthetic Energy Transduction
NSF1709506$500,0002017–2021PIRePORTER
Collaborative Research: De novo Protein Constructs for Photosynthetic Energy Transduction
NSF1413295$351,0002014–2017PIRePORTER
Protein Mimetics Based on Beta Amino Acids
NSF9905566$488,0261999–2002PIRePORTER
Libraries of Template-Constrained Cyclic Peptides
NSF9634646$391,2751996–1999PIRePORTER

Frequent collaborators

Hyunil Jo · University of California, San Francisco21 papers (2012–2025)Jun Wang · University of Science and Technology Liaoning15 papers (2013–2022)Yibing Wu · Hebei Medical University15 papers (2012–2024)Mei Hong · Nanjing Forestry University11 papers (2012–2023)Chunlong Ma · University of Arizona10 papers (2013–2021)Nicholas F. Polizzi · Harvard University9 papers (2017–2025)Lijun Liu · University of Kansas8 papers (2017–2023)Haifan Wu · Wichita State University8 papers (2017–2024)Stanley B. Prusiner · University of California, San Francisco7 papers (2014–2023)Thomas Lemmin · University of Bern7 papers (2013–2018)Marco Mravic · Scripps Research Institute7 papers (2015–2024)Carlo Condello · University of California, San Francisco7 papers (2014–2025)Robert A. Lamb · Leonardo (United Kingdom)7 papers (2013–2014) · 7 papers (2013–2014)Jessica L. Thomaston · University of California, San Francisco7 papers (2015–2023)Jan Stöhr · AbbVie (United States)6 papers (2014–2019)Bobo Dang · Westlake University6 papers (2017–2025)Giacomo Fiorin · National Heart Lung and Blood Institute5 papers (2013–2015)Huong T. Kratochvil · University of North Carolina at Chapel Hill5 papers (2018–2024)Michael L. Klein · Hebrew University of Jerusalem5 papers (2013–2015)