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Paul Daly

Utrecht University · NL
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Area of research
Biomedical Engineering · Biotechnology
Research interest
Research interests include Biology, Pythium, Biochemistry, Chemistry, Fungus, and Hypha.
h-index
citations
550
works
25
NIH funding
primary concept
email

Recent publications

Guidelines toward ecologically-informed bioprospecting for microbial plastic degradation
Biotechnology Advances 2025cited by 7position: middledoi
Discovery of the dipicolinic acid synthase in the spoilage fungus Paecilomyces reveals its role in spore heat, salt, and alkaline pH resistance
Food Research International 2025cited by 5position: middledoi
Genome and transcriptome analysis of the lignite-degrading Trichoderma cf. simile WF8 strain highlights potential degradation mechanisms
International Biodeterioration & Biodegradation 2025cited by 2position: lastdoi
Genus-wide analysis of <i>Trichoderma</i> antagonism toward <i>Pythium</i> and <i>Globisporangium</i> plant pathogens and the contribution of cellulases to the antagonism
Applied and Environmental Microbiology 2024cited by 13position: middledoi
Biological Control of a Root-Knot Nematode Meloidogyne incognita Infection of Tomato (Solanum lycopersicum L.) by the Oomycete Biocontrol Agent Pythium oligandrum
Journal of Fungi 2024cited by 5position: middledoi
Growth, Enzymatic, and Transcriptomic Analysis of xyr1 Deletion Reveals a Major Regulator of Plant Biomass-Degrading Enzymes in Trichoderma harzianum
Biomolecules 2024cited by 4position: lastdoi
Volatile Organic Compounds Emitted by the Biocontrol Agent Pythium oligandrum Contribute to Ginger Plant Growth and Disease Resistance
Microbiology Spectrum 2023cited by 26position: lastdoi
Volatile Organic Compounds from <i>Pythium oligandrum</i> Play a Role in Its Parasitism on Plant-Pathogenic <i>Pythium myriotylum</i>
Applied and Environmental Microbiology 2023cited by 20position: lastdoi
Borrelidin-producing and root-colonizing Streptomyces rochei is a potent biopesticide for two soil-borne oomycete-caused plant diseases
Biological Control 2023cited by 15position: middledoi
A <i>Pythium myriotylum</i> Small Cysteine-Rich Protein Triggers Immune Responses in Diverse Plant Hosts
Molecular Plant-Microbe Interactions 2023cited by 11position: middledoi
An F‐box protein attenuates fungal xylanase‐triggered immunity by destabilizing <scp>LRR‐RLP NbEIX2</scp> in a <scp>SOBIR1</scp>‐dependent manner
New Phytologist 2022cited by 29position: middledoi
The use of mutant and engineered microbial agents for biological control of plant diseases caused by Pythium: Achievements versus challenges
Fungal Biology Reviews 2022cited by 18position: middledoi
Genome of <i>Pythium myriotylum</i> Uncovers an Extensive Arsenal of Virulence-Related Genes among the Broad-Host-Range Necrotrophic <i>Pythium</i> Plant Pathogens
Microbiology Spectrum 2022cited by 12position: firstdoi
From lignocellulose to plastics: Knowledge transfer on the degradation approaches by fungi
Biotechnology Advances 2021cited by 84position: firstdoi
CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
The Cell Surface 2021cited by 40position: middledoi
Dual-Transcriptomic, Microscopic, and Biocontrol Analyses of the Interaction Between the Bioeffector Pythium oligandrum and the Pythium Soft-Rot of Ginger Pathogen Pythium myriotylum
Frontiers in Microbiology 2021cited by 14position: firstdoi
Trehalose-6-phosphate phosphatase inhibitor: N-(phenylthio) phthalimide, which can inhibit the DON biosynthesis of Fusarium graminearum
Pesticide Biochemistry and Physiology 2021cited by 11position: middledoi
Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus <i>Dichomitus squalens</i>
Applied and Environmental Microbiology 2019cited by 38position: firstdoi
Colonies of the fungus <scp> <i>Aspergillus niger</i> </scp> are highly differentiated to adapt to local carbon source variation
Environmental Microbiology 2019cited by 25position: firstdoi
Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
Biotechnology for Biofuels 2019cited by 22position: middledoi
Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens
Journal of Biotechnology 2019cited by 16position: firstdoi
Induction of Genes Encoding Plant Cell Wall-Degrading Carbohydrate-Active Enzymes by Lignocellulose-Derived Monosaccharides and Cellobiose in the White-Rot Fungus Dichomitus squalens
Applied and Environmental Microbiology 2018cited by 39position: middledoi
<i>Dichomitus squalens</i> partially tailors its molecular responses to the composition of solid wood
Environmental Microbiology 2018cited by 37position: firstdoi
<scp>ARA</scp>1 regulates not only <scp>l</scp>‐arabinose but also <scp>d</scp>‐galactose catabolism in <i>Trichoderma reesei</i>
FEBS Letters 2017cited by 37position: lastdoi
Genetic transformation of the white-rot fungus Dichomitus squalens using a new commercial protoplasting cocktail
Journal of Microbiological Methods 2017cited by 20position: firstdoi

Grants

No grants ingested yet.

Frequent collaborators

Lihui Wei · Jiangsu University14 papers (2021–2025)Dongmei Zhou · University of California, Riverside10 papers (2021–2024)Ronald P. de Vries · Utrecht University10 papers (2017–2021)Siqiao Chen · Nanjing Agricultural University9 papers (2021–2025)Sheng Deng · Shandong University of Technology9 papers (2021–2025)Irina S. Druzhinina · Nanjing Agricultural University8 papers (2021–2025)Miia Mäkelä · Utrecht University7 papers (2017–2021)Mao Peng · Utrecht University6 papers (2018–2021)Anna Lipzen · Université Claude Bernard Lyon 15 papers (2018–2021)Taha Majid Mahmood Sheikh · Nanjing Agricultural University5 papers (2021–2023)Jinfeng Zhang · University of Georgia5 papers (2021–2023)Vivian Ng · Lawrence Berkeley National Laboratory5 papers (2018–2021)Igor V. Grigoriev · Lawrence Berkeley National Laboratory5 papers (2018–2021)Sara Casado López · Utrecht University4 papers (2017–2019)Yishen Zhao · Union Hospital4 papers (2023–2024)Xiaoyu Wang · Southwestern Medical Center4 papers (2022–2023)Feng Cai · Sun Yat-sen University4 papers (2022–2025)Mei Wang · Shihezi University4 papers (2019–2021)Hui Feng · Ministry of Education of the People's Republic of China4 papers (2022–2024) · 4 papers (2021–2024)
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