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Miia Mäkelä

Utrecht University · NL
Area of research
Environmental Chemistry · Geophysics
Research interest
Research interests include Biology, Biomass (ecology), Aspergillus niger, Lignin, Genome, and Fungus.
h-index
citations
4,081
works
58
NIH funding
primary concept
email

Recent publications

Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in <i>Colletotrichum</i> fungi
GigaScience 2024cited by 17position: middledoi
Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi
Bioresource Technology 2023cited by 20position: middledoi
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum
Journal of Fungi 2022cited by 42position: middledoi
Detailed analysis of the D-galactose catabolic pathways in Aspergillus niger reveals complexity at both metabolic and regulatory level
Fungal Genetics and Biology 2022cited by 26position: middledoi
Carbohydrate esterase family 16 contains fungal hemicellulose acetyl esterases (HAEs) with varying specificity
New Biotechnology 2022cited by 20position: middledoi
Comparative Analysis of Enzyme Production Patterns of Lignocellulose Degradation of Two White Rot Fungi: Obba rivulosa and Gelatoporia subvermispora
Biomolecules 2022cited by 17position: middledoi
Xylitol production from plant biomass by Aspergillus niger through metabolic engineering
Bioresource Technology 2021cited by 43position: middledoi
Discovery and Functional Analysis of a Salicylic Acid Hydroxylase from Aspergillus niger
Applied and Environmental Microbiology 2021cited by 40position: middledoi
CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
The Cell Surface 2021cited by 40position: middledoi
Revisiting a ‘simple’ fungal metabolic pathway reveals redundancy, complexity and diversity
Microbial Biotechnology 2021cited by 37position: middledoi
Fungal glycoside hydrolase family 44 xyloglucanases are restricted to the phylum Basidiomycota and show a distinct xyloglucan cleavage pattern
iScience 2021cited by 20position: lastdoi
A comparative genomics study of 23 Aspergillus species from section Flavi
Nature Communications 2020cited by 207position: middledoi
Engineering of primary carbon metabolism in filamentous fungi
Biotechnology Advances 2020cited by 76position: middledoi
Genomic and Postgenomic Diversity of Fungal Plant Biomass Degradation Approaches
Trends in Microbiology 2020cited by 61position: lastdoi
Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus <i>Pycnoporus</i>
DNA Research 2020cited by 47position: middledoi
CRISPR/Cas9 facilitates rapid generation of constitutive forms of transcription factors in Aspergillus niger through specific on-site genomic mutations resulting in increased saccharification of plant biomass
Enzyme and Microbial Technology 2020cited by 44position: middledoi
Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator
Microbiological Research 2020cited by 23position: middledoi
Penicillium subrubescens adapts its enzyme production to the composition of plant biomass
Bioresource Technology 2020cited by 21position: middledoi
A comparison between the homocyclic aromatic metabolic pathways from plant-derived compounds by bacteria and fungi
Biotechnology Advances 2019cited by 141position: middledoi
Developments and opportunities in fungal strain engineering for the production of novel enzymes and enzyme cocktails for plant biomass degradation
Biotechnology Advances 2019cited by 125position: middledoi
Discovery of Novel <i>p</i>-Hydroxybenzoate-<i>m</i>-hydroxylase, Protocatechuate 3,4 Ring-Cleavage Dioxygenase, and Hydroxyquinol 1,2 Ring-Cleavage Dioxygenase from the Filamentous Fungus <i>Aspergillus niger</i>
ACS Sustainable Chemistry & Engineering 2019cited by 56position: middledoi
The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds
Frontiers in Bioengineering and Biotechnology 2019cited by 45position: lastdoi
Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus <i>Dichomitus squalens</i>
Applied and Environmental Microbiology 2019cited by 38position: middledoi
Recombinant production and characterization of six novel GH27 and GH36 α-galactosidases from Penicillium subrubescens and their synergism with a commercial mannanase during the hydrolysis of lignocellulosic biomass
Bioresource Technology 2019cited by 36position: middledoi
Colonies of the fungus <scp> <i>Aspergillus niger</i> </scp> are highly differentiated to adapt to local carbon source variation
Environmental Microbiology 2019cited by 25position: middledoi
Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens
Journal of Biotechnology 2019cited by 16position: lastdoi
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri
Nature Genetics 2018cited by 233position: middledoi
Selective Cleavage of Lignin β-<i>O</i>-4 Aryl Ether Bond by β-Etherase of the White-Rot Fungus <i>Dichomitus squalens</i>
ACS Sustainable Chemistry & Engineering 2018cited by 103position: middledoi
In Silico Analysis of Putative Sugar Transporter Genes in Aspergillus niger Using Phylogeny and Comparative Transcriptomics
Frontiers in Microbiology 2018cited by 80position: lastdoi
Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales)
Frontiers in Microbiology 2018cited by 58position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Ronald P. de Vries · Utrecht University52 papers (2013–2024)Kristiina Hildén · University of Nottingham27 papers (2014–2022)Mao Peng · Utrecht University22 papers (2017–2024)Igor V. Grigoriev · Lawrence Berkeley National Laboratory14 papers (2017–2024)Adiphol Dilokpimol · Utrecht University14 papers (2016–2022)María Victoria Aguilar Pontes · Utrecht University12 papers (2016–2022)Anna Lipzen · Université Claude Bernard Lyon 111 papers (2018–2024)Vivian Ng · Lawrence Berkeley National Laboratory9 papers (2018–2022)Ad Wiebenga · Utrecht University7 papers (2013–2023)Paul Daly · Utrecht University7 papers (2017–2021)Miaomiao Zhou · Utrecht University7 papers (2013–2017) · 7 papers (2016–2022)Mei Wang · Shihezi University6 papers (2019–2021) · 6 papers (2013–2021)Tania Chroumpi · Utrecht University6 papers (2020–2022)Sara Casado López · Utrecht University5 papers (2017–2019)Roland S. Kun · Utrecht University5 papers (2019–2022)Bernard Henrissat · Centre National de la Recherche Scientifique5 papers (2013–2024) · 4 papers (2016–2022) · 4 papers (2013–2017)