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Theodore Alexandrov

BioInnovation Institute · US
Area of research
Spectroscopy · Molecular Biology
Research interest
Research interests include Metabolomics and Mass Spectrometry Studies, Mass Spectrometry Techniques and Applications, Methane Hydrates and Related Phenomena, and Advanced Proteomics Techniques and Applications.
h-index
55
citations
17,433
works
286
NIH funding
primary concept
Chemistry
email

Recent publications

How to build the virtual cell with artificial intelligence: Priorities and opportunities
Cell 2024cited by 254position: middledoi
Spatial single-cell isotope tracing reveals heterogeneity of de novo fatty acid synthesis in cancer
Nature Metabolism 2024cited by 57position: lastdoi
METASPACE-ML: Context-specific metabolite annotation for imaging mass spectrometry using machine learning
Nature Communications 2024cited by 34position: lastdoi
A call for accessible tools to unlock single-cell immunometabolism research
Nature Metabolism 2024cited by 7position: middledoi
An atlas of healthy and injured cell states and niches in the human kidney
Nature 2023cited by 624position: middledoi
Sublethal necroptosis signaling promotes inflammation and liver cancer
Immunity 2023cited by 131position: middledoi
Endogenous adenine mediates kidney injury in diabetic models and predicts diabetic kidney disease in patients
Journal of Clinical Investigation 2023cited by 58position: middledoi
Enhancing metabolite coverage in MALDI-MSI using laser post-ionisation (MALDI-2)
Analytical Methods 2023cited by 23position: middledoi
<sup>13</sup> C-SpaceM: Spatial single-cell isotope tracing reveals heterogeneity of <i>de novo</i> fatty acid synthesis in cancer
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 5position: lastdoi
A reference tissue atlas for the human kidney
Science Advances 2022cited by 167position: middledoi
A user-friendly tool for cloud-based whole slide image segmentation with examples from renal histopathology
Communications Medicine 2022cited by 48position: middledoi
Multi-Scalar Data Integration Links Glomerular Angiopoietin-Tie Signaling Pathway Activation With Progression of Diabetic Kidney Disease
Diabetes 2022cited by 17position: middledoi
A model for network-based identification and pharmacological targeting of aberrant, replication-permissive transcriptional programs induced by viral infection
Communications Biology 2022cited by 8position: middledoi
3019 – SINGLE-CELL PROTEO-GENOMIC REFERENCE MAPS OF THE HEMATOPOIETIC SYSTEM ENABLE THE PURIFICATION AND MASSIVE PROFILING OF PRECISELY DEFINED CELL STATES
Experimental Hematology 2022cited by 2position: middledoi
A Model for Network-Based Identification and Pharmacological Targeting of Aberrant, Replication-Permissive Transcriptional Programs Induced by Viral Infection
Research Square 2022cited by 0position: middledoi
SpaceM reveals metabolic states of single cells
Nature Methods 2021cited by 335position: lastdoi
SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids
Cell stem cell 2021cited by 265position: middledoi
Single-cell proteo-genomic reference maps of the hematopoietic system enable the purification and massive profiling of precisely defined cell states
Nature Immunology 2021cited by 201position: middledoi
Rationale and design of the Kidney Precision Medicine Project
Kidney International 2021cited by 186position: middledoi
Single‐cell analyses reveal SARS‐CoV‐2 interference with intrinsic immune response in the human gut
Molecular Systems Biology 2021cited by 118position: middledoi
Single‐cell transcriptomics reveals immune response of intestinal cell types to viral infection
Molecular Systems Biology 2021cited by 57position: lastdoi
Cadherin-11, Sparc-related modular calcium binding protein-2, and Pigment epithelium-derived factor are promising non-invasive biomarkers of kidney fibrosis
Kidney International 2021cited by 44position: middledoi
HERMES: a molecular-formula-oriented method to target the metabolome
Nature Methods 2021cited by 37position: middledoi
Large-scale, three-dimensional tissue cytometry of the human kidney: a complete and accessible pipeline
Laboratory Investigation 2021cited by 26position: middledoi
Single-cell proteo-genomic reference maps of the hematopoietic system enable the purification and massive profiling of precisely defined cell states
bioRxiv (Cold Spring Harbor Laboratory) 2021cited by 25position: middledoi
Rapid Automated Annotation and Analysis of N-Glycan Mass Spectrometry Imaging Data Sets Using NGlycDB in METASPACE
Analytical Chemistry 2021cited by 23position: middledoi
Metabolic decisions in development and disease—a Keystone Symposia report
Annals of the New York Academy of Sciences 2021cited by 14position: middledoi
Network-based identification and pharmacological targeting of host cell master regulators induced by SARS-CoV-2 infection
bioRxiv (Cold Spring Harbor Laboratory) 2021cited by 0position: middledoi
Feature-based molecular networking in the GNPS analysis environment
Nature Methods 2020cited by 1,507position: middledoi
Critical Role of Type III Interferon in Controlling SARS-CoV-2 Infection in Human Intestinal Epithelial Cells
Cell Reports 2020cited by 357position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Pieter C. Dorrestein · University of Connecticut14 papers (2012–2018)Sergio Triana · Broad Institute13 papers (2020–2022)Steeve Boulant · University of Florida9 papers (2020–2022)Megan L. Stanifer · University of Florida9 papers (2020–2022)Carmon Kee · Heidelberg University6 papers (2020–2021)Vladimı́r Beneš · European Molecular Biology Laboratory5 papers (2020–2022)Mohammed Shahraz · European Bioinformatics Institute5 papers (2020–2024)Ivan Protsyuk · European Molecular Biology Laboratory5 papers (2017–2018)Patricio Doldan · Queen Mary University of London5 papers (2020–2022)Diana Ordoñez‐Rueda · German Cancer Research Center5 papers (2020–2022)Jeramie D. Watrous · University of California San Diego5 papers (2012–2015)Malte Paulsen · European Molecular Biology Laboratory5 papers (2020–2022)Rob Knight · University of California San Diego4 papers (2015–2017)Amina Bouslimani · L'Oreal (United States)4 papers (2015–2017)Mingxun Wang · University of California, Riverside4 papers (2015–2018)Markus Mukenhirn · University of Cambridge4 papers (2020–2021)Nuno Bandeira · University of California San Diego4 papers (2012–2017)Alexey V. Melnik · OncoMed (United States)4 papers (2016–2017)Forest Rohwer · San Diego State University3 papers (2016–2017)Gary J. Patti · Washington University in St. Louis3 papers (2021–2024)