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Yang Dai

Salk Institute for Biological Studies ·
Area of research
Molecular Biology · Genetics
Research interest
Research interests include Gut microbiota and health, Gene expression and cancer classification, Diabetes and associated disorders, and Bioinformatics and Genomic Networks.
h-index
43
citations
6,162
works
293
NIH funding
primary concept
email

Recent publications

Unveiling the cell-type-specific landscape of cellular senescence through single-cell transcriptomics using SenePy
Nature Communications 2025cited by 48position: middledoi
Estrogen-related receptors regulate innate and adaptive muscle mitochondrial energetics through cooperative and distinct actions
Proceedings of the National Academy of Sciences 2025cited by 12position: middledoi
Transcription Factor Activity Regulating Macrophage Heterogeneity during Skin Wound Healing
The Journal of Immunology 2024cited by 11position: middledoi
The primate gut microbiota contributes to interspecific differences in host metabolism
Microbial Genomics 2024cited by 5position: middledoi
MicroRNA-based engineering of mesenchymal stem cell extracellular vesicles for treatment of retinal ischemic disorders
Acta Biomaterialia 2023cited by 40position: middledoi
Inhibiting stromal Class I HDACs curbs pancreatic cancer progression
Nature Communications 2023cited by 23position: middledoi
MED12 mutation activates the tryptophan/kynurenine/AHR pathway to promote growth of uterine leiomyomas
JCI Insight 2023cited by 14position: middledoi
Single-cell transcriptomic profiling of lung endothelial cells identifies dynamic inflammatory and regenerative subpopulations
JCI Insight 2022cited by 60position: middledoi
Single-cell sequencing reveals novel cellular heterogeneity in uterine leiomyomas
Human Reproduction 2022cited by 48position: middledoi
Gestational Insulin Resistance Is Mediated by the Gut Microbiome–Indoleamine 2,3-Dioxygenase Axis
Gastroenterology 2022cited by 38position: middledoi
Temporal transcriptomic analysis using TrendCatcher identifies early and persistent neutrophil activation in severe COVID-19
JCI Insight 2022cited by 20position: middledoi
In Vivo Genome-Wide PGR Binding in Pregnant Human Myometrium Identifies Potential Regulators of Labor
Reproductive Sciences 2022cited by 15position: middledoi
Information retrieval in single cell chromatin analysis using TF-IDF transformation methods
2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2022cited by 10position: lastdoi
FGF21 promotes thermogenic gene expression as an autocrine factor in adipocytes
Cell Reports 2021cited by 95position: middledoi
Glycogen metabolism links glucose homeostasis to thermogenesis in adipocytes
Nature 2021cited by 77position: middledoi
MiMeNet: Exploring microbiome-metabolome relationships using neural networks
PLoS Computational Biology 2021cited by 76position: lastdoi
Progesterone receptor-DNA methylation crosstalk regulates depletion of uterine leiomyoma stem cells: A potential therapeutic target
Stem Cell Reports 2021cited by 20position: middledoi
Publisher Correction: Immune-evasive human islet-like organoids ameliorate diabetes
Nature 2021cited by 1position: middledoi
Immune-evasive human islet-like organoids ameliorate diabetes
Nature 2020cited by 328position: middledoi
PopPhy-CNN: A Phylogenetic Tree Embedded Architecture for Convolutional Neural Networks to Predict Host Phenotype From Metagenomic Data
IEEE Journal of Biomedical and Health Informatics 2020cited by 113position: lastdoi
Vitamin D receptor promotes healthy microbial metabolites and microbiome
Scientific Reports 2020cited by 75position: middledoi
Targeting DNA Methylation Depletes Uterine Leiomyoma Stem Cell–enriched Population by Stimulating Their Differentiation
Endocrinology 2020cited by 21position: middledoi
Utilizing longitudinal microbiome taxonomic profiles to predict food allergy via Long Short-Term Memory networks
PLoS Computational Biology 2019cited by 57position: middledoi
Differential microRNA profile underlies the divergent healing responses in skin and oral mucosal wounds
Scientific Reports 2019cited by 43position: middledoi
Overexpression of the Oral Mucosa-Specific microRNA-31 Promotes Skin Wound Closure
International Journal of Molecular Sciences 2019cited by 25position: middledoi
Using Autoencoders for Predicting Latent Microbiome Community Shifts Responding to Dietary Changes
2019cited by 12position: lastdoi
Vitamin D Switches BAF Complexes to Protect β Cells
Cell 2018cited by 215position: middledoi
MetaLonDA: a flexible R package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies
Microbiome 2018cited by 75position: middledoi
Regulation of Microbiota by Vitamin D Receptor: A Nuclear Weapon in Metabolic Diseases
Nuclear Receptor Research 2018cited by 50position: middledoi
ERRγ Preserves Brown Fat Innate Thermogenic Activity
Cell Reports 2018cited by 41position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Christopher Liddle · Salk Institute for Biological Studies9 papers (2016–2025)Ruth T. Yu · Salk Institute for Biological Studies9 papers (2016–2025)Ronald M. Evans · Salk Institute for Biological Studies9 papers (2016–2025)Michael Downes · Salk Institute for Biological Studies9 papers (2016–2025)Derek Reiman · University of Illinois Chicago8 papers (2017–2024)Annette R. Atkins · Salk Institute for Biological Studies7 papers (2016–2025)Serdar E. Bulun · Northwestern University7 papers (2012–2023)Eiji Yoshihara · University of California, Los Angeles5 papers (2016–2021)Ping Yin · Huazhong Agricultural University5 papers (2012–2023)Ahmed A. Metwally · Google (United States)5 papers (2016–2020)Xiaofeng Zhou · Jinan University4 papers (2013–2019)Zong Wei · Nantong University4 papers (2016–2021)Jalees Rehman · Illinois College4 papers (2018–2025) · 4 papers (2020–2023)Tae Gyu Oh · Salk Institute for Biological Studies4 papers (2020–2025)John S. Coon · Rush University Medical Center4 papers (2012–2023)Mehrdad Zandigohar · University of Illinois Chicago3 papers (2022–2024)David L. Perkins · United States Fish and Wildlife Service3 papers (2016–2019)Tiffany Tseng · Yale University3 papers (2016–2021)Zujian Chen · University of Illinois Chicago3 papers (2016–2019)