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Serap Erkek

Izmir University · TR
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Area of research
Molecular Biology · Cancer Research
Research interest
Research interests include Cancer Genomics and Diagnostics, Epigenetics and DNA Methylation, Chromatin Remodeling and Cancer, and Genomics and Chromatin Dynamics.
h-index
40
citations
22,680
works
115
NIH funding
primary concept
email

Recent publications

Retinoids and EZH2 inhibitors cooperate to orchestrate anti-oncogenic effects on bladder cancer cells.
2024cited by 4position: contributordoi
FLI1 and FRA1 transcription factors drive the transcriptional regulatory networks characterizing muscle invasive bladder cancer.
2023cited by 13position: contributordoi
De novo transcriptome assembly of mouse male germ cells reveals novel genes, stage-specific bidirectional promoter activity, and noncoding RNA expression.
2023cited by 6position: contributordoi
Author Correction: Genomic basis for RNA alterations in cancer
Nature 2023cited by 1position: middledoi
Primary cilia contribute to the aggressiveness of atypical teratoid/rhabdoid tumors
Cell Death and Disease 2022cited by 5position: middledoi
Identification of the gene expression changes and gene regulatory aspects in ELF3 mutant bladder cancer.
2022cited by 5position: contributordoi
Retinoic acid signaling and bladder cancer: Epigenetic deregulation, therapy and beyond.
2021cited by 7position: contributordoi
Classification of bladder cancer cell lines according to regulon activity.
2021cited by 3position: contributordoi
Genomic basis for RNA alterations in cancer
Nature 2020cited by 422position: middledoi
Genomic basis for RNA alterations in cancer.
2020cited by 339position: contributordoi
Analysis of open chromatin regions in bladder cancer links β-catenin mutations and Wnt signaling with neuronal subtype of bladder cancer.
2020cited by 8position: contributordoi
Identification and Analyses of Extra-Cranial and Cranial Rhabdoid Tumor Molecular Subgroups Reveal Tumors with Cytotoxic T Cell Infiltration
Cell Reports 2019cited by 118position: middledoi
Identification and Analyses of Extra-Cranial and Cranial Rhabdoid Tumor Molecular Subgroups Reveal Tumors with Cytotoxic T Cell Infiltration.
2019cited by 94position: contributordoi
Lsd1 as a therapeutic target in Gfi1-activated medulloblastoma
Nature Communications 2019cited by 84position: middledoi
Comprehensive Analysis of Chromatin States in Atypical Teratoid/Rhabdoid Tumor Identifies Diverging Roles for SWI/SNF and Polycomb in Gene Regulation.
2019cited by 79position: contributordoi
Lsd1 as a therapeutic target in Gfi1-activated medulloblastoma.
2019cited by 70position: contributordoi
InTAD: chromosome conformation guided analysis of enhancer target genes
BMC Bioinformatics 2019cited by 17position: middledoi
InTAD: chromosome conformation guided analysis of enhancer target genes.
2019cited by 13position: contributordoi
Functional relevance of genes predicted to be affected by epigenetic alterations in atypical teratoid/rhabdoid tumors.
2019cited by 7position: contributordoi
ATRT-09. INTEGRATIVE ANALYSES OF GENE REGULATORY LANDSCAPES REVEAL RHABDOID TUMOR SUBGROUPS WITH POSSIBLE IMMUNE MODULATION THROUGH EPIGENETIC DYSREGULATION
Neuro-Oncology 2019cited by 0position: middledoi
ATRT-07. TARGETING PRIMARY CILIOGENESIS IN ATYPICAL TERATOID/RHABDOID TUMORS
Neuro-Oncology 2019cited by 0position: middledoi
The landscape of genomic alterations across childhood cancers
Nature 2018cited by 1,589position: middledoi
Comprehensive Analysis of Chromatin States in Atypical Teratoid/Rhabdoid Tumor Identifies Diverging Roles for SWI/SNF and Polycomb in Gene Regulation
Cancer Cell 2018cited by 89position: firstdoi
Opposing Effects of CREBBP Mutations Govern the Phenotype of Rubinstein-Taybi Syndrome and Adult SHH Medulloblastoma
Developmental Cell 2018cited by 45position: middledoi
Author Correction: The landscape of genomic alterations across childhood cancers
Nature 2018cited by 28position: middledoi
Functional relevance of genes predicted to be affected by epigenetic alterations in atypical teratoid/rhabdoid tumors
Journal of Neuro-Oncology 2018cited by 12position: middledoi
ATRT-09. WHOLE GENOME AND EPIGENOME CHARACTERIZATION LINKS ATRT-MYC TO A SUBGROUP OF RENAL RHABDOID TUMORS
Neuro-Oncology 2018cited by 1position: middledoi
ATRT-05. USING DROSOPHILA TO EXPLORE THE FUNCTIONAL RELEVANCE OF GENES AFFECTED BY EPIGENETIC ALTERATIONS IN ATYPICAL TERATOID/RHABDOID TUMORS (AT/RT)
Neuro-Oncology 2018cited by 0position: middledoi
ATRT-34. TARGETING PRIMARY CILIOGENESIS IN ATYPICAL TERATOID/RHABDOID TUMORS
Neuro-Oncology 2018cited by 0position: middledoi
ATRT-24. CHROMATIN SEGMENTATION IN ATRT REVEALS AN IMPORTANT ROLE FOR RESIDUAL SWI/SNF MEMBERS
Neuro-Oncology 2018cited by 0position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Stefan M. Pfister · Université du Québec19 papers (2015–2019)Marcel Kool · European Bioinformatics Institute15 papers (2015–2019)Pascal D. Johann · Bayer (Germany)13 papers (2015–2019)Martin Hasselblatt · University Hospital Münster11 papers (2015–2019)Lukas Chávez · Children’s Institute7 papers (2015–2019)Marc Zapatka · National Cancer Institute7 papers (2015–2019)Kornelius Kerl · University Hospital Münster6 papers (2015–2019) · 6 papers (2021–2024)Michael C. Frühwald · Bayer (Germany)5 papers (2015–2019)Paul A. Northcott · Children's Research Hospital5 papers (2015–2019)Volker Hovestadt · Harvard University5 papers (2015–2016)David Jones · Mayo Clinic in Florida5 papers (2015–2016) · 4 papers (2018–2019)Amar Gajjar · Mills Peninsula Health Services4 papers (2015–2017)Astrid Jeibmann · University of Münster4 papers (2018–2019) · 4 papers (2018–2019)Jan O. Korbel · Eppendorf (Belgium)4 papers (2015–2019) · 4 papers (2018–2019)Marco A. Marra · BC Cancer Agency3 papers (2018–2019)Peter Lichter · German Cancer Research Center3 papers (2015–2016)
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