← back to search

David Colognori

Innovative Genomics Institute · US
Area of research
Molecular Biology · Genetics
Research interest
Research interests include CRISPR and Genetic Engineering, RNA and protein synthesis mechanisms, RNA Research and Splicing, and Genomics and Chromatin Dynamics.
h-index
19
citations
4,127
works
31
NIH funding
primary concept
email

Recent publications

Single-molecule live-cell RNA imaging with CRISPR–Csm
Nature Biotechnology 2025cited by 36position: middledoi
CRISPRi-ART enables functional genomics of diverse bacteriophages using RNA-binding dCas13d
Nature Microbiology 2025cited by 22position: middledoi
Precise transcript targeting by CRISPR-Csm complexes
Nature Biotechnology 2023cited by 80position: firstdoi
CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes
Nucleic Acids Research 2023cited by 36position: middledoi
CasPEDIA Database: A Functional Classification System for Class 2 CRISPR-Cas Enzymes
2023cited by 6position: middledoi
Decorating chromatin for enhanced genome editing using CRISPR-Cas9
Proceedings of the National Academy of Sciences 2022cited by 50position: middledoi
Xist Deletional Analysis Reveals an Interdependency between Xist RNA and Polycomb Complexes for Spreading along the Inactive X
Molecular Cell 2019cited by 182position: firstdoi
Xist RNA antagonizes the SWI/SNF chromatin remodeler BRG1 on the inactive X chromosome
Nature Structural & Molecular Biology 2019cited by 67position: middledoi
Repeat E anchors Xist RNA to the inactive X chromosomal compartment through CDKN1A-interacting protein (CIZ1)
Proceedings of the National Academy of Sciences 2017cited by 144position: middledoi
Genome-wide identification of autosomal genes with allelic imbalance of chromatin state
PLoS ONE 2017cited by 9position: middledoi
A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation
Science 2015cited by 499position: middledoi
Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes
Nature Communications 2015cited by 412position: middledoi
Locus-Specific Targeting to the X Chromosome Revealed by the RNA Interactome of CTCF
Molecular Cell 2015cited by 175position: middledoi
Allelic Imbalance Is a Prevalent and Tissue-Specific Feature of the Mouse Transcriptome
Genetics 2015cited by 49position: middledoi
Long Noncoding RNAs: Past, Present, and Future
Genetics 2013cited by 1,923position: middledoi
Human spliceosomal protein CWC22 plays a role in coupling splicing to exon junction complex deposition and nonsense-mediated decay
Proceedings of the National Academy of Sciences 2012cited by 101position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Jeannie T. Lee · Harvard University9 papers (2013–2019)Jennifer A. Doudna · QB34 papers (2022–2025)Hongjae Sunwoo · Harvard University3 papers (2015–2019)Marena Trinidad · University of California, San Francisco3 papers (2022–2025)Bernhard Payer · Universitat Pompeu Fabra3 papers (2015–2017)Yesu Jeon · Harvard University3 papers (2015–2017)Stefan F. Pinter · University of Connecticut3 papers (2015–2017)Brian J. Beliveau · California Institute for Regenerative Medicine2 papers (2015–2015)Johnny T. Kung · Massachusetts General Hospital2 papers (2013–2015)Attila Szántó · Epizyme (United States)2 papers (2015–2019) · 2 papers (2015–2015)Barry Kesner · Massachusetts General Hospital2 papers (2015–2015)Eda Yildirim · Dokuz Eylül University2 papers (2015–2017)Chen‐Yu Wang · Central South University2 papers (2019–2019)Ruslan I. Sadreyev · Harvard University2 papers (2015–2017)John E. Froberg · Harvard University2 papers (2015–2017)Jennifer A. Erwin · Johns Hopkins University1 papers (2015–2015)Emeric Charles · University of California, Berkeley1 papers (2025–2025)Joan A. Steitz · University of Geneva1 papers (2012–2012)Janice Y Ahn · Howard Hughes Medical Institute1 papers (2015–2015)