Area of research
Genetics · Molecular Biology
Research interest
Research interests include Evolution and Genetic Dynamics, Genomics and Phylogenetic Studies, SARS-CoV-2 and COVID-19 Research, and Influenza Virus Research Studies.
The mutation rate of SARS-CoV-2 is highly variable between sites and is influenced by sequence context, genomic region, and RNA structure
A systematic nomenclature for mpox viruses causing outbreaks with sustained human-to-human transmission
The consequences of SARS-CoV-2 within-host persistence
A pseudovirus system enables deep mutational scanning of the full SARS-CoV-2 spike
APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016
Fitness effects of mutations to SARS-CoV-2 proteins
Evolution of the SARS-CoV-2 Mutational Spectrum
Joint visualization of seasonal influenza serology and phylogeny to inform vaccine composition
Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus
Evolution, geographic spreading, and demographic distribution of Enterovirus D68
Nextclade: clade assignment, mutation calling and quality control for viral genomes
Novel SARS-CoV-2 variants: the pandemics within the pandemic
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse
Investigate the origins of COVID-19
Interactions between seasonal human coronaviruses and implications for the SARS-CoV-2 pandemic: A retrospective study in Stockholm, Sweden, 2009-2020
COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation
Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States
Cryptic transmission of SARS-CoV-2 in Washington state
Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable
Nextstrain: real-time tracking of pathogen evolution
TreeTime: Maximum-likelihood phylodynamic analysis
Predictive Modeling of Influenza Shows the Promise of Applied Evolutionary Biology
<i>In vivo</i> mutation rates and the landscape of fitness costs of HIV-1
Estimating time of HIV-1 infection from next-generation sequence diversity
Establishment and stability of the latent HIV-1 DNA reservoir
Revisiting adult neurogenesis and the role of erythropoietin for neuronal and oligodendroglial differentiation in the hippocampus
Error rates, PCR recombination, and sampling depth in HIV-1 whole genome deep sequencing
Population genomics of intrapatient HIV-1 evolution