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Gydo C. P. van Zundert

Utrecht University · NL
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Area of research
Molecular Biology · Materials Chemistry
Research interest
Research interests include Computer science, Web server, Docking (animal), Software, Haddock, and Biophysics.
h-index
citations
4,158
works
13
NIH funding
primary concept
email

Recent publications

The HADDOCK2.4 web server for integrative modeling of biomolecular complexes
Nature Protocols 2024cited by 479position: middledoi
<scp>qFit</scp> 3: Protein and ligand multiconformer modeling for X‐ray crystallographic and single‐particle <scp>cryo‐EM</scp> density maps
Protein Science 2020cited by 79position: middledoi
<i>qFit-ligand</i> Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X-Ray Electron Density Maps
Journal of Medicinal Chemistry 2018cited by 68position: firstdoi
Sense and Simplicity in HADDOCK Scoring: Lessons from CASP‐CAPRI (page 418)
Proteins Structure Function and Bioinformatics 2017cited by 35position: middledoi
The DisVis and PowerFit Web Servers: Explorative and Integrative Modeling of Biomolecular Complexes
Journal of Molecular Biology 2016cited by 63position: firstdoi
Defining the limits and reliability of rigid-body fitting in cryo-EM maps using multi-scale image pyramids
Journal of Structural Biology 2016cited by 11position: firstdoi
The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes
Journal of Molecular Biology 2015cited by 2,936position: firstdoi
Probing a cell-embedded megadalton protein complex by DNP-supported solid-state NMR
Nature Methods 2015cited by 146position: middledoi
DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes
Bioinformatics 2015cited by 80position: firstdoi
Integrative Modeling of Biomolecular Complexes: HADDOCKing with Cryo-Electron Microscopy Data
Structure 2015cited by 73position: firstdoi
Fast and sensitive rigid-body fitting into cryo-EM density maps with PowerFit
AIMS Biophysics 2015cited by 63position: firstdoi
Modeling Protein–Protein Complexes Using the HADDOCK Webserver “Modeling Protein Complexes with HADDOCK”
Methods in molecular biology 2014cited by 58position: firstdoi
Defining the limits of homology modeling in information‐driven protein docking
Proteins Structure Function and Bioinformatics 2013cited by 67position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Alexandre M. J. J. Bonvin · Utrecht University11 papers (2013–2024)Mikaël Trellet · Utrecht University5 papers (2013–2024)Adrien S. J. Melquiond · Utrecht University5 papers (2013–2024)João Rodrigues · Utrecht University4 papers (2013–2024)Ezgi Karaca · Utrecht University4 papers (2013–2024)Panagiotis L. Kastritis · Utrecht University3 papers (2013–2017)Marc van Dijk · Utrecht University3 papers (2013–2017)Jörg Schaarschmidt · Utrecht University2 papers (2016–2024)James S. Fraser · University of California, San Francisco2 papers (2018–2020)D.A. Keedy · CUNY Advanced Science Research Center2 papers (2018–2020) · 2 papers (2018–2020)Siddarth Narasimhan · Utrecht University2 papers (2015–2017)Zeynep Kurkcuoglu · Utrecht University2 papers (2016–2017)Henry van den Bedem · University of California, San Francisco2 papers (2018–2020)Sjoerd J. de Vries · Utrecht University2 papers (2013–2015)Carl Schmitz · Utrecht University2 papers (2013–2015)Blake T. Riley · Monash University1 papers (2020–2020) · 1 papers (2013–2013)Marco Giulini · Utrecht University1 papers (2024–2024)Stephanie A. Wankowicz · Healthwise1 papers (2020–2020)
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