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Eran Halperin

University of California, Los Angeles · US
Area of research
Genetics · Molecular Biology
Research interest
Research interests include Genetic Associations and Epidemiology, Genetic Mapping and Diversity in Plants and Animals, Epigenetics and DNA Methylation, and Genetic and phenotypic traits in livestock.
h-index
64
citations
39,015
works
277
NIH funding
primary concept
email

Recent publications

Single-cell DNA methylome and 3D genome atlas of human subcutaneous adipose tissue
Nature Genetics 2025cited by 5position: middledoi
Accurate prediction of disease-risk factors from volumetric medical scans by a deep vision model pre-trained with 2D scans
Nature Biomedical Engineering 2024cited by 12position: lastdoi
Genome wide association study and genomic risk prediction of age related macular degeneration in Israel
Scientific Reports 2024cited by 9position: middledoi
Genome-wide association study and genomic risk prediction of age-related macular degeneration in Israel
medRxiv 2023cited by 0position: middledoi
Methylation risk scores are associated with a collection of phenotypes within electronic health record systems
npj Genomic Medicine 2022cited by 56position: lastdoi
Leveraging genomic diversity for discovery in an electronic health record linked biobank: the UCLA ATLAS Community Health Initiative
Genome Medicine 2022cited by 51position: middledoi
Imputation of the continuous arterial line blood pressure waveform from non-invasive measurements using deep learning
Scientific Reports 2021cited by 67position: lastdoi
Bladder Cancer Immunotherapy by BCG Is Associated with a Significantly Reduced Risk of Alzheimer’s Disease and Parkinson’s Disease
Vaccines 2021cited by 64position: middledoi
Automated identification of clinical features from sparsely annotated 3-dimensional medical imaging
npj Digital Medicine 2021cited by 24position: lastdoi
Accurate estimation of cell composition in bulk expression through robust integration of single-cell information
Nature Communications 2020cited by 448position: lastdoi
Stochasticity constrained by deterministic effects of diet and age drive rumen microbiome assembly dynamics
Nature Communications 2020cited by 255position: middledoi
Context-aware dimensionality reduction deconvolutes gut microbial community dynamics
Nature Biotechnology 2020cited by 120position: middledoi
Enhancing droplet-based single-nucleus RNA-seq resolution using the semi-supervised machine learning classifier DIEM
Scientific Reports 2020cited by 100position: middledoi
Compositional Lotka-Volterra describes microbial dynamics in the simplex
PLoS Computational Biology 2020cited by 71position: middledoi
The causal effect of obesity on prediabetes and insulin resistance reveals the important role of adipose tissue in insulin resistance
PLoS Genetics 2020cited by 71position: middledoi
A machine learning algorithm to increase COVID-19 inpatient diagnostic capacity
PLoS ONE 2020cited by 71position: middledoi
Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis
Nature Communications 2020cited by 67position: lastdoi
Scalable probabilistic PCA for large-scale genetic variation data
PLoS Genetics 2020cited by 50position: middledoi
Association of a Variant in VWA3A with Response to Anti-Vascular Endothelial Growth Factor Treatment in Neovascular AMD
Investigative Ophthalmology & Visual Science 2020cited by 10position: middledoi
FEAST: fast expectation-maximization for microbial source tracking
Nature Methods 2019cited by 637position: lastdoi
A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions
Science Advances 2019cited by 433position: middledoi
Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology
Nature Communications 2019cited by 181position: lastdoi
An automated machine learning-based model predicts postoperative mortality using readily-extractable preoperative electronic health record data
British Journal of Anaesthesia 2019cited by 101position: lastdoi
Modeling the temporal dynamics of the gut microbial community in adults and infants
PLoS Computational Biology 2019cited by 71position: lastdoi
Increase of body mass index and waist circumference predicts development of metabolic syndrome criteria in apparently healthy individuals with 2 and 5 years follow-up
International Journal of Obesity 2019cited by 42position: middledoi
Deciphering genetic factors that determine melon fruit‐quality traits using <scp>RNA</scp>‐Seq‐based high‐resolution <scp>QTL</scp> and <scp>eQTL</scp> mapping
The Plant Journal 2018cited by 129position: middledoi
BayesCCE: a Bayesian framework for estimating cell-type composition from DNA methylation without the need for methylation reference
Genome biology 2018cited by 63position: lastdoi
Genome-wide methylation data mirror ancestry information
Epigenetics & Chromatin 2017cited by 157position: lastdoi
GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data
Bioinformatics 2017cited by 69position: lastdoi
An ancestry‐based approach for detecting interactions
Genetic Epidemiology 2017cited by 25position: middledoi

Grants

III: Small: Combinatorial Optimization Methods for Problems in Molecular Biology and Genetics
NSF1217615$497,3802012–2015PIRePORTER
III-CXT: Population Stratification Methods
NSF0713254$449,9622007–2010PIRePORTER
Collaborative Research: SEIII: Estimating Haplotype Frequencies
NSF0513599$603,7732005–2009PIRePORTER

Frequent collaborators

Elior Rahmani · Stanford University14 papers (2016–2025)Sriram Sankararaman · University of California, Los Angeles9 papers (2012–2025)Liat Shenhav · New York University8 papers (2017–2020)Noah Zaitlen · UCLA Medical Center8 papers (2015–2022)Eleazar Eskin · University of California, Los Angeles8 papers (2012–2020)Brian L. Hill · University of California, Los Angeles7 papers (2019–2022) · 7 papers (2017–2024)Esteban G. Burchard · Harbor–UCLA Medical Center6 papers (2012–2017)Nadav Rakocz · University of California, Los Angeles5 papers (2019–2022)Celeste Eng · ID Genomics (United States)5 papers (2012–2017)Brandon Jew · Amgen (United States)5 papers (2019–2020)Joshua Galanter · Kaiser Permanente South San Francisco Medical Center4 papers (2016–2017)Päivi Pajukanta · University of California, Los Angeles4 papers (2020–2025)Marcus Alvarez · University of California, San Francisco4 papers (2020–2025)Ira Hofer · Child Health and Development Institute4 papers (2018–2022)Chun Ye · University of California, San Francisco4 papers (2016–2020)Kirsi H. Pietiläinen · University of Helsinki4 papers (2020–2025)Liran Tiosano · Hebrew University of Jerusalem3 papers (2021–2024)Bogdan Paşaniuc · University Ucinf3 papers (2012–2022)Batya Rinsky · Hebrew University of Jerusalem3 papers (2020–2024)