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Olivier Fédrigo

Rockefeller University · US
Area of research
Molecular Biology · Genetics
Research interest
Research interests include Genomics and Phylogenetic Studies, Genetic diversity and population structure, Chromosomal and Genetic Variations, and Marine animal studies overview.
h-index
45
citations
14,487
works
176
NIH funding
primary concept
Biology
email

Recent publications

Chromosome-level echidna genome illuminates evolution of multiple sex chromosome system in monotremes
GigaScience 2025cited by 14position: middledoi
On the ancestry and evolution of the extinct dire wolf
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 6position: middledoi
Genomic infrastructure for cetacean research and conservation: reference genomes for eight families spanning the cetacean tree of life
Frontiers in Marine Science 2025cited by 2position: middledoi
Chromosome-level reference genome assembly of the gyrfalcon (Falco rusticolus) and population genomics offer insights into the falcon population in Mongolia
Scientific Reports 2025cited by 1position: middledoi
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain
Nature Neuroscience 2024cited by 100position: middledoi
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy
Nature Biotechnology 2024cited by 64position: middledoi
A region of suppressed recombination misleads neoavian phylogenomics
Proceedings of the National Academy of Sciences 2024cited by 34position: middledoi
A genomic basis of vocal rhythm in birds
Nature Communications 2024cited by 17position: middledoi
Distinct patterns of genetic variation at low-recombining genomic regions represent haplotype structure
Evolution 2024cited by 14position: middledoi
Pronounced early differentiation underlies zebra finch gonadal germ cell development
Developmental Biology 2024cited by 7position: middledoi
A chromosome-level genome assembly for the dugong (<i>Dugong dugon</i>)
Journal of Heredity 2024cited by 7position: middledoi
A reference genome for the Harpy Eagle reveals steady demographic decline and chromosomal rearrangements in the origin of Accipitriformes
Scientific Reports 2024cited by 6position: middledoi
A draft human pangenome reference
Nature 2023cited by 1,117position: middledoi
Pangenome graph construction from genome alignments with Minigraph-Cactus
Nature Biotechnology 2023cited by 296position: middledoi
Recombination between heterologous human acrocentric chromosomes
Nature 2023cited by 139position: middledoi
Increased mutation and gene conversion within human segmental duplications
Nature 2023cited by 109position: middledoi
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories
Proceedings of the National Academy of Sciences 2023cited by 51position: middledoi
An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes
Cell Reports 2023cited by 47position: middledoi
A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
BMC Biology 2023cited by 38position: middledoi
A chromosome-level reference genome and pangenome for barn swallow population genomics
Cell Reports 2023cited by 30position: middledoi
A high-quality reference genome for the critically endangered Aeolian wall lizard, <i>Podarcis raffonei</i>
Journal of Heredity 2023cited by 16position: middledoi
The admixed brushtail possum genome reveals invasion history in New Zealand and novel imprinted genes
Nature Communications 2023cited by 12position: middledoi
Sex-specific changes in autosomal methylation rate in ageing common terns
Frontiers in Ecology and Evolution 2023cited by 10position: middledoi
Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome
Cell Reports Methods 2023cited by 6position: middledoi
Chromosome-level genome assembly of chub mackerel (Scomber japonicus) from the Indo-Pacific Ocean
Scientific Data 2023cited by 5position: middledoi
Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs
Bioinformatics 2022cited by 1,016position: middledoi
Haplotype-resolved assembly of diploid genomes without parental data
Nature Biotechnology 2022cited by 920position: middledoi
The Earth BioGenome Project 2020: Starting the clock
Proceedings of the National Academy of Sciences 2022cited by 362position: middledoi
Semi-automated assembly of high-quality diploid human reference genomes
Nature 2022cited by 223position: middledoi
Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue
Nature Biotechnology 2022cited by 128position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Erich D. Jarvis · Rockefeller University27 papers (2019–2025)Jacquelyn Mountcastle · Rockefeller University12 papers (2020–2024)Giulio Formenti · Rockefeller University12 papers (2022–2025)Bettina Haase · Rockefeller University11 papers (2018–2024)Kerstin Howe · Wellcome Sanger Institute11 papers (2020–2025)Jennifer Balacco · Rockefeller University7 papers (2022–2024)Ying Sims · Wellcome Sanger Institute6 papers (2020–2025)William Chow · Oxford University Press (United Kingdom)5 papers (2021–2024)Jonathan Wood · Wellcome Sanger Institute5 papers (2021–2023)Alan Tracey · Wellcome Sanger Institute5 papers (2020–2025)Hagen Tilgner · Cornell University4 papers (2018–2024)Arang Rhie · National Human Genome Research Institute4 papers (2021–2025)Matthew T. Biegler · Rockefeller University4 papers (2019–2024)Guojie Zhang · Zhejiang International Studies University3 papers (2022–2025)Sarah Pelan · Wellcome Sanger Institute3 papers (2023–2025)Mark Blaxter · University of Edinburgh3 papers (2020–2021)Marcela Uliano‐Silva · Nord University3 papers (2022–2024)Michelle Smith · Wellcome Sanger Institute3 papers (2020–2022)Richard Durbin · University of Cambridge3 papers (2020–2022)Adam M. Phillippy · National Human Genome Research Institute3 papers (2021–2025)