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Hagen Tilgner

Cornell University · US
Area of research
Molecular Biology · Cancer Research
Research interest
Research interests include RNA Research and Splicing, Single-cell and spatial transcriptomics, RNA modifications and cancer, and Cancer-related molecular mechanisms research.
h-index
30
citations
19,814
works
98
NIH funding
primary concept
email

Recent publications

A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types
Nature Communications 2025cited by 8position: lastdoi
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
Nature Methods 2024cited by 195position: middledoi
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain
Nature Neuroscience 2024cited by 100position: lastdoi
The single-cell opioid responses in the context of HIV (SCORCH) consortium
Molecular Psychiatry 2024cited by 16position: middledoi
Pronounced early differentiation underlies zebra finch gonadal germ cell development
Developmental Biology 2024cited by 7position: middledoi
Accurate isoform discovery with IsoQuant using long reads
Nature Biotechnology 2023cited by 246position: lastdoi
A guide to the BRAIN Initiative Cell Census Network data ecosystem
PLoS Biology 2023cited by 51position: middledoi
The variables on RNA molecules: concert or cacophony? Answers in long-read sequencing
Nature Methods 2023cited by 34position: lastdoi
Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue
Nature Biotechnology 2022cited by 128position: lastdoi
Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9
Scientific Reports 2022cited by 14position: middledoi
The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide
bioRxiv (Cold Spring Harbor Laboratory) 2022cited by 7position: middledoi
A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain
Nature Communications 2021cited by 234position: lastdoi
Schizophrenia is defined by cell-specific neuropathology and multiple neurodevelopmental mechanisms in patient-derived cerebral organoids
Molecular Psychiatry 2021cited by 146position: middledoi
SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse
Neuron 2019cited by 1,015position: middledoi
Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells
Nature Biotechnology 2018cited by 367position: lastdoi
Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis
Nature Communications 2017cited by 402position: middledoi
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework
Genome Medicine 2017cited by 58position: middledoi
Landscape of transcription in human cells
Nature 2012cited by 5,362position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Anoushka Joglekar · Cornell University4 papers (2018–2024)Paul Collier · Cornell University4 papers (2018–2024)Olivier Fédrigo · Rockefeller University4 papers (2018–2024)Wen Hu · Cornell University3 papers (2023–2025)Julien Jarroux · Cornell University3 papers (2023–2025)Bettina Haase · Rockefeller University3 papers (2018–2024)Erich D. Jarvis · Rockefeller University3 papers (2022–2024)M. Elizabeth Ross · Cornell University3 papers (2018–2025)Justine Hsu · Cornell University2 papers (2023–2025)Natan Belchikov · Cornell University2 papers (2023–2025) · 2 papers (2023–2025)Dmitry Korkin · University of Missouri2 papers (2024–2025)Oleksandr Narykov · Argonne National Laboratory2 papers (2024–2025)Matthew T. Biegler · Rockefeller University2 papers (2022–2024)Yi He · Yunnan University2 papers (2023–2025)Careen Foord · Cornell University2 papers (2023–2025)Eric E. Schadt · New York Proton Center1 papers (2017–2017)Wenjie Luo · Cornell University1 papers (2018–2018) · 1 papers (2017–2017) · 1 papers (2023–2023)