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Jason D. Buenrostro

Harvard University · US
Area of research
Molecular Biology · Cancer Research
Research interest
Research interests include Single-cell and spatial transcriptomics, Epigenetics and DNA Methylation, Genomics and Chromatin Dynamics, and Cancer Genomics and Diagnostics.
h-index
58
citations
31,496
works
182
NIH funding
primary concept
Biology
email

Recent publications

The Somatic Mosaicism across Human Tissues Network
Nature 2025cited by 39position: middledoi
Myeloid progenitor dysregulation fuels immunosuppressive macrophages in tumours
Nature 2025cited by 19position: middledoi
Unified molecular approach for spatial epigenome, transcriptome, and cell lineages
Proceedings of the National Academy of Sciences 2025cited by 12position: middledoi
Expansion in situ genome sequencing links nuclear abnormalities to aberrant chromatin regulation
Science 2025cited by 8position: lastdoi
Invigorating discovery and clinical translation of aging biomarkers
Nature Aging 2025cited by 6position: middledoi
Coupling CRISPR scanning with targeted chromatin accessibility profiling using a double-stranded DNA deaminase
Nature Methods 2025cited by 3position: middledoi
Deciphering the impact of genomic variation on function
Nature 2024cited by 77position: middledoi
Expansion <i>in situ</i> genome sequencing links nuclear abnormalities to hotspots of aberrant euchromatin repression
bioRxiv (Cold Spring Harbor Laboratory) 2024cited by 14position: lastdoi
Epigenetic memory of coronavirus infection in innate immune cells and their progenitors
Cell 2023cited by 260position: middledoi
A transcription factor atlas of directed differentiation
Cell 2023cited by 220position: middledoi
Heritable transcriptional defects from aberrations of nuclear architecture
Nature 2023cited by 84position: middledoi
Systematic benchmarking of single-cell ATAC-sequencing protocols
Nature Biotechnology 2023cited by 50position: middledoi
Structural and functional properties of mSWI/SNF chromatin remodeling complexes revealed through single-cell perturbation screens
Molecular Cell 2023cited by 45position: middledoi
Author Correction: Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling
Nature Biotechnology 2023cited by 2position: middledoi
Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex
Cell 2022cited by 229position: middledoi
SMARCA4 inactivation promotes lineage-specific transformation and early metastatic features in the lung
DSpace@MIT (Massachusetts Institute of Technology) 2022cited by 86position: middle
Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex
Nature Neuroscience 2022cited by 48position: middledoi
Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram
Nature Methods 2021cited by 863position: middledoi
The neutrotime transcriptional signature defines a single continuum of neutrophils across biological compartments
Nature Communications 2021cited by 331position: middledoi
Spatial genomics enables multi-modal study of clonal heterogeneity in tissues
Nature 2021cited by 264position: middledoi
In situ genome sequencing resolves DNA sequence and structure in intact biological samples
Science 2021cited by 209position: middledoi
Gut CD4+ T cell phenotypes are a continuum molded by microbes, not by TH archetypes
Nature Immunology 2021cited by 180position: middledoi
Corticosterone inhibits GAS6 to govern hair follicle stem-cell quiescence
Nature 2021cited by 169position: middledoi
Single-cell ATAC-seq reveals GATA2-dependent priming defect in myeloid and a maturation bottleneck in lymphoid lineages
Blood Advances 2021cited by 26position: middledoi
1508 Single-cell epigenetic profiling highlights genetic impact on chromatin accessibility in SLE
Abstracts 2021cited by 0position: middledoi
Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin
Cell 2020cited by 1,188position: lastdoi
Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling
Nature Biotechnology 2020cited by 308position: middledoi
Hyperactivation of sympathetic nerves drives depletion of melanocyte stem cells
Nature 2020cited by 284position: middledoi
Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma
Cancer Cell 2020cited by 233position: middledoi
ImmGen at 15
Nature Immunology 2020cited by 79position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Caleb A. Lareau · Gladstone Institutes15 papers (2018–2023)Aviv Regev · Moscow Institute of Thermal Technology14 papers (2018–2023)William J. Greenleaf · Stanford Medicine13 papers (2013–2018)Sai Ma · University of South China13 papers (2020–2023)Howard Y. Chang · Amgen (United States)11 papers (2013–2025)Zachary Chiang · Broad Institute9 papers (2020–2025)Fei Chen · Broad Institute7 papers (2020–2025)Martin J. Aryee · Harvard University7 papers (2018–2023)Beijing Wu · National Cheng Kung University6 papers (2015–2018)Vijay G. Sankaran · Broad Institute6 papers (2016–2025)Fabiana M. Duarte · Hospital do Divino Espírito Santo5 papers (2019–2025)Andrew Earl · Broad Institute5 papers (2020–2025)Vinay K. Kartha · VIR Biotechnology (United States)5 papers (2019–2022)Evan Z. Macosko · Broad Institute4 papers (2018–2021)Caroline Comenho · Broad Institute4 papers (2023–2025)Leif S. Ludwig · Max Delbrück Center4 papers (2019–2023)Travis Law · Broad Institute4 papers (2018–2020)Christoph Muus · Broad Institute4 papers (2019–2023)Lindsay M. LaFave · Montefiore Einstein Comprehensive Cancer Center4 papers (2020–2022) · 4 papers (2020–2025)