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Jun S. Song

University of Illinois Urbana-Champaign · US
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Area of research
Molecular Biology
Research interest
Research interests include Genomics and Chromatin Dynamics, RNA and protein synthesis mechanisms, Epigenetics and DNA Methylation, and Gene expression and cancer classification.
h-index
46
citations
12,797
works
189
NIH funding
primary concept
email

Recent publications

RONIN/HCF1‐TFEB Axis Protects Against D‐Galactose‐Induced Cochlear Hair Cell Senescence Through Autophagy Activation
Advanced Science 2025cited by 17position: middledoi
Novel <i>SOX10</i> indel mutations drive schwannomas through impaired transactivation of myelination gene programs
Neuro-Oncology 2023cited by 29position: middledoi
Ferroptosis-Related Gene Signature Predicts the Prognosis of Skin Cutaneous Melanoma and Response to Immunotherapy
Frontiers in Genetics 2021cited by 31position: middledoi
Chd1 protects genome integrity at promoters to sustain hypertranscription in embryonic stem cells
Nature Communications 2021cited by 24position: middledoi
Measuring DNA mechanics on the genome scale
Nature 2020cited by 160position: middledoi
Single-Cell Profiling Reveals Divergent, Globally Patterned Immune Responses in Murine Skin Inflammation
iScience 2020cited by 66position: middledoi
Single-Cell Transcriptomics Reveals Spatial and Temporal Turnover of Keratinocyte Differentiation Regulators
Frontiers in Genetics 2019cited by 61position: lastdoi
Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution
Cell Reports 2018cited by 317position: middledoi
Disruption of the β1L Isoform of GABP Reverses Glioblastoma Replicative Immortality in a TERT Promoter Mutation-Dependent Manner
Cancer Cell 2018cited by 148position: middledoi
High accuracy label-free classification of single-cell kinetic states from holographic cytometry of human melanoma cells
Scientific Reports 2017cited by 65position: middledoi
Inhibition of mTOR induces a paused pluripotent state
Nature 2016cited by 287position: middledoi
YAP Induces Human Naive Pluripotency
Cell Reports 2016cited by 215position: middledoi
Intratumoral Heterogeneity of the Epigenome
Cancer Cell 2016cited by 212position: middledoi
The transcription factor GABP selectively binds and activates the mutant TERT promoter in cancer
Science 2015cited by 569position: middledoi
DNA Methylation and Somatic Mutations Converge on the Cell Cycle and Define Similar Evolutionary Histories in Brain Tumors
Cancer Cell 2015cited by 276position: middledoi
The Cancer Genome Atlas Analysis Predicts MicroRNA for Targeting Cancer Growth and Vascularization in Glioblastoma
Molecular Therapy 2015cited by 78position: middledoi
The Genetics of Splicing in Neuroblastoma
Cancer Discovery 2015cited by 22position: middledoi
Systematic Identification of Barriers to Human iPSC Generation
Cell 2014cited by 97position: middledoi
Chd1 is essential for the high transcriptional output and rapid growth of the mouse epiblast
Development 2014cited by 83position: middledoi
HiTSelect: a comprehensive tool for high-complexity-pooled screen analysis
Nucleic Acids Research 2014cited by 66position: lastdoi
Mutational Analysis Reveals the Origin and Therapy-Driven Evolution of Recurrent Glioma
Science 2013cited by 1,384position: middledoi
Oncogenic BRAF Regulates Oxidative Metabolism via PGC1α and MITF
Cancer Cell 2013cited by 812position: middledoi
Integration of Genome-wide Approaches Identifies lncRNAs of Adult Neural Stem Cells and Their Progeny In Vivo
Cell stem cell 2013cited by 251position: middledoi
<i>BCL2A1</i> is a lineage-specific antiapoptotic melanoma oncogene that confers resistance to BRAF inhibition
Proceedings of the National Academy of Sciences 2013cited by 224position: middledoi
Bivalent Chromatin Marks Developmental Regulatory Genes in the Mouse Embryonic Germline In Vivo
Cell Reports 2013cited by 179position: middledoi
Somatic cells regulate maternal mRNA translation and developmental competence of mouse oocytes
Nature Cell Biology 2013cited by 165position: middledoi
Normalization, bias correction, and peak calling for ChIP-seq
Statistical Applications in Genetics and Molecular Biology 2012cited by 130position: lastdoi
Sox1 marks an activated neural stem/progenitor cell in the hippocampus
Development 2012cited by 93position: middledoi
Polycomb-Like 3 Promotes Polycomb Repressive Complex 2 Binding to CpG Islands and Embryonic Stem Cell Self-Renewal
PLoS Genetics 2012cited by 93position: middledoi
CHANCE: comprehensive software for quality control and validation of ChIP-seq data
Genome biology 2012cited by 70position: lastdoi

Grants

CAREER: Computational Analyses of the Interactions between DNA and Chromatin Structure
NSF1442504$507,1752014–2017PIRePORTER
CAREER: Computational Analyses of the Interactions between DNA and Chromatin Structure
NSF1144866$707,9362011–2014PIRePORTER

Frequent collaborators

Miguel Ramalho‐Santos · Reproductive Science Center9 papers (2012–2021)Aarón Díaz · Neurological Surgery6 papers (2012–2014)J Costello · City College of San Francisco5 papers (2015–2018)Robert J.A. Bell · Australian National University5 papers (2012–2018)Miroslav Hejna · University of Illinois Urbana-Champaign5 papers (2016–2021)Courtney Onodera · Center for Genomic Science4 papers (2013–2015)Qin Han · Donghua University3 papers (2014–2016)Chibo Hong · University of California, San Francisco3 papers (2015–2018)Abhinav Nellore · NYU Langone Health3 papers (2012–2013)Aydan Bulut-Karslıoğlu · Max Planck Institute for Molecular Genetics3 papers (2014–2021)David E. Fisher · University of California, Riverside2 papers (2013–2013)Laure Blouin · University of California, San Francisco2 papers (2014–2016)Rizwan Haq · Harvard University2 papers (2013–2013)Priscilla Wong · Arsenal Biosciences (United States)2 papers (2014–2016)Susan M. Chang · Moffitt Cancer Center2 papers (2015–2015)Tali Mazor · Dana-Farber Cancer Institute2 papers (2015–2016)Paymann Harirchian · San Francisco VA Medical Center2 papers (2019–2020)Annette M. Molinaro · Universidade São Francisco2 papers (2015–2015)Jennifer A. Wargo · The University of Texas MD Anderson Cancer Center2 papers (2013–2013)Chih-Jen Lin · MRC Centre for Regenerative Medicine2 papers (2013–2014)
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