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Amnon Koren

Roswell Park Comprehensive Cancer Center · US
Area of research
Molecular Biology · Cancer Research
Research interest
Research interests include DNA Repair Mechanisms, Cancer Genomics and Diagnostics, Genomics and Chromatin Dynamics, and Plant Virus Research Studies.
h-index
29
citations
10,467
works
112
NIH funding
primary concept
email

Recent publications

Tissue-specific resistance and susceptibility to the tomato brown rugose fruit virus (ToBRFV) conferred by Solanum pennellii loci
BMC Plant Biology 2025cited by 14position: middledoi
DNA replication in early mammalian embryos is patterned, predisposing lamina-associated regions to fragility
Nature Communications 2024cited by 22position: middledoi
Incomplete reprogramming of DNA replication timing in induced pluripotent stem cells
Cell Reports 2024cited by 8position: lastdoi
Generation, genomic characterization, and differentiation of triploid human embryonic stem cells
Stem Cell Reports 2023cited by 5position: middledoi
Replication stress impairs chromosome segregation and preimplantation development in human embryos
Cell 2022cited by 117position: middledoi
Genomic signature of Fanconi anaemia DNA repair pathway deficiency in cancer
Nature 2022cited by 86position: middledoi
Comprehensive analysis of DNA replication timing across 184 cell lines suggests a role for<i>MCM10</i>in replication timing regulation
Human Molecular Genetics 2022cited by 10position: lastdoi
The genetic architecture of DNA replication timing in human pluripotent stem cells
Nature Communications 2021cited by 36position: lastdoi
Cancer Mutational Processes Vary in Their Association with Replication Timing and Chromatin Accessibility
Cancer Research 2021cited by 25position: middledoi
Genomic methods for measuring DNA replication dynamics
Chromosome Research 2019cited by 57position: lastdoi
Replication timing alterations in leukemia affect clinically relevant chromosome domains
Blood Advances 2019cited by 26position: middledoi
Insight Into Late Wilting Disease of Cucumber Demonstrates the Complexity of the Phenomenon in Fluctuating Environments
Plant Disease 2019cited by 16position: middledoi
Variable Retention of Differentiation-specific DNA Replication Timing in Human Pediatric Leukemia
bioRxiv (Cold Spring Harbor Laboratory) 2019cited by 1position: middledoi
Germline DNA replication timing shapes mammalian genome composition
Nucleic Acids Research 2018cited by 36position: middledoi
Quantification of somatic mutation flow across individual cell division events by lineage sequencing
Genome Research 2018cited by 31position: middledoi
Analysis of somatic microsatellite indels identifies driver events in human tumors
Nature Biotechnology 2017cited by 138position: middledoi
Combined Infection with <i>Cucumber green mottle mosaic virus</i> and <i>Pythium</i> Species Causes Extensive Collapse in Cucumber Plants
Plant Disease 2017cited by 9position: middledoi
Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair
Cell 2016cited by 441position: middledoi
Cell-of-origin chromatin organization shapes the mutational landscape of cancer
Nature 2015cited by 606position: middledoi
Genome-wide patterns and properties of de novo mutations in humans
Nature Genetics 2015cited by 435position: middledoi
T cell help controls the speed of the cell cycle in germinal center B cells
Science 2015cited by 229position: middledoi
Epidemiological study of<i>Cucumber green mottle mosaic virus</i>in greenhouses enables reduction of disease damage in cucurbit production
Annals of Applied Biology 2015cited by 48position: middledoi
Genetic Variation in Human DNA Replication Timing
Cell 2014cited by 173position: firstdoi
Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
mBio 2014cited by 22position: middledoi
Mutational heterogeneity in cancer and the search for new cancer-associated genes
Nature 2013cited by 5,691position: middledoi
Whole-Genome Sequencing in Autism Identifies Hot Spots for De Novo Germline Mutation
Cell 2012cited by 583position: middledoi
Differential Relationship of DNA Replication Timing to Different Forms of Human Mutation and Variation
The American Journal of Human Genetics 2012cited by 245position: firstdoi

Grants

The Evolution of DNA Replication Timing in Great Apes
NSF2415012$406,5252024–2026PIRePORTER
The Evolution of DNA Replication Timing in Great Apes
NSF1921341$1,053,1602019–2024PIRePORTER

Frequent collaborators

Paz Polak · ID Genomics (United States)6 papers (2012–2017)Dashiell J. Massey · Duke University4 papers (2019–2024) · 4 papers (2015–2025)Michael S. Lawrence · Harvard University3 papers (2015–2017)Yosef E. Maruvka · Technion – Israel Institute of Technology3 papers (2016–2018)Gad Getz · Broad Institute3 papers (2016–2018)Michael V. Zuccaro · Boston Children's Hospital3 papers (2022–2024) · 3 papers (2014–2017)Dieter Egli · Stem Cell Institute3 papers (2022–2024)Nicholas J. Haradhvala · Center for Cancer Research3 papers (2016–2018)Steven A. McCarroll · Broad Institute2 papers (2012–2014)Kent W. Mouw · Harvard University2 papers (2017–2018) · 2 papers (2015–2017)Meenakshi Devidas · University of Pennsylvania2 papers (2019–2019)Esther Rheinbay · Harvard University2 papers (2016–2017)Dieter Egli · Columbia University2 papers (2021–2024)Ning Wang · Sheffield Hallam University2 papers (2021–2024)Jaegil Kim · GlaxoSmithKline (United States)2 papers (2016–2018)Oriya Vardi · Hebrew University of Jerusalem2 papers (2018–2021)Timour Baslan · University of Pennsylvania2 papers (2022–2024)