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Harmen J. Bussemaker

Columbia University · US
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Area of research
Molecular Biology
Research interest
Research focused on Computational biology and Transcription factor, with related work in RNA, DNA, Epigenomics. Notable publications include 'Evaluation of methods for modeling transcription factor sequence specificity', 'DSSR: an integrated software tool for dissecting the spatial structure of RNA', and 'Quantitative modeling of transcription factor binding specificities using DNA shape'.
h-index
citations
1,371
works
7
NIH funding
primary concept
email

Recent publications

Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors
Nature Communications 2022cited by 39position: middledoi
Accurate and sensitive quantification of protein-DNA binding affinity
Proceedings of the National Academy of Sciences 2018cited by 129position: lastdoi
Quantitative Analysis of the DNA Methylation Sensitivity of Transcription Factor Complexes
Cell Reports 2017cited by 139position: lastdoi
DSSR: an integrated software tool for dissecting the spatial structure of RNA
Nucleic Acids Research 2015cited by 313position: middledoi
Quantitative modeling of transcription factor binding specificities using DNA shape
Proceedings of the National Academy of Sciences 2015cited by 277position: middledoi
Evaluation of methods for modeling transcription factor sequence specificity
Nature Biotechnology 2013cited by 409position: middledoi
Nuclear Pore Component Nup98 Is a Potential Tumor Suppressor and Regulates Posttranscriptional Expression of Select p53 Target Genes
Molecular Cell 2012cited by 65position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Richard S. Mann · Columbia University Irving Medical Center4 papers (2015–2022)Carol Prives · Columbia University2 papers (2012–2018)Judith F. Kribelbauer · Columbia University2 papers (2017–2018)William A. Freed-Pastor · Broad Institute2 papers (2017–2018)Ryan Loker · New York University2 papers (2018–2022)Chaitanya Rastogi · Columbia University2 papers (2018–2022)H. Tomas Rube · Columbia University2 papers (2018–2022)Oleg Laptenko · Columbia University2 papers (2017–2018)Gabriella Martini · Columbia University2 papers (2017–2018)Peter Schirmacher · Kliniken Essen-Mitte1 papers (2012–2012)Raluca Gordân · University of Massachusetts Chan Medical School1 papers (2015–2015)Ruiying Zhao · Columbia University1 papers (2012–2012)Xiang‐Jun Lu · Columbia University1 papers (2015–2015)Tobias Pusterla · DKFZ-ZMBH Alliance1 papers (2012–2012)Tianyin Zhou · University of Southern California1 papers (2015–2015)Lin Yang · University of Rhode Island1 papers (2015–2015)Stephan Singer · University Children's Hospital Tübingen1 papers (2012–2012) · 1 papers (2013–2013)Anette Ouwehand · University of Massachusetts Chan Medical School1 papers (2012–2012)Gustavo Stolovitzky · New York University1 papers (2013–2013)
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