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Sharmishtaa Seshamani

Allen Institute ·
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Area of research
Biophysics · Cognitive Neuroscience
Research interest
Research interests include Neural dynamics and brain function, Advanced Fluorescence Microscopy Techniques, Cell Image Analysis Techniques, and Advanced Electron Microscopy Techniques and Applications.
h-index
18
citations
1,751
works
64
NIH funding
primary concept
email

Recent publications

Topographic structure and function of locus coeruleus norepinephrine neurons
bioRxiv (Cold Spring Harbor Laboratory) 2026cited by 0position: middledoi
Inhibitory specificity from a connectomic census of mouse visual cortex
Nature 2025cited by 58position: middledoi
Connectomics of predicted Sst transcriptomic types in mouse visual cortex
Nature 2025cited by 19position: middledoi
Perisomatic ultrastructure efficiently classifies cells in mouse cortex
Nature 2025cited by 16position: middledoi
The synaptic architecture of layer 5 thick tufted excitatory neurons in mouse visual cortex
Nature Neuroscience 2025cited by 11position: middledoi
Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues
eLife 2025cited by 7position: middledoi
Author Correction: Inhibitory specificity from a connectomic census of mouse visual cortex
Nature 2025cited by 0position: middledoi
Ultrastructural differences impact cilia shape and external exposure across cell classes in the visual cortex
Current Biology 2024cited by 39position: middledoi
Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues
eLife 2024cited by 8position: middledoi
The Synaptic Architecture of Layer 5 Thick Tufted Excitatory Neurons in the Visual Cortex of Mice
Research Square 2024cited by 2position: middledoi
Data for Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex
Zenodo (CERN European Organization for Nuclear Research) 2024cited by 1position: middledoi
Data for Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex
Zenodo (CERN European Organization for Nuclear Research) 2024cited by 0position: middledoi
SmartSPIM Pipeline: A Scalable Cloud-Based Image Processing Pipeline for Light-sheet Microscopy Data
Microscopy and Microanalysis 2024cited by 0position: lastdoi
Author response: Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues
2024cited by 0position: middledoi
Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 75position: middledoi
Nanometer-scale views of visual cortex reveal anatomical features of primary cilia poised to detect synaptic spillover
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 24position: middledoi
Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues
2023cited by 14position: middledoi
Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 13position: middledoi
Integrating EM and Patch-seq data: Synaptic connectivity and target specificity of predicted Sst transcriptomic types
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 12position: middledoi
The Synaptic Architecture of Layer 5 Thick Tufted Excitatory Neurons in the Visual Cortex of Mice
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 7position: middledoi
Data for Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex
Zenodo (CERN European Organization for Nuclear Research) 2023cited by 0position: middledoi
Oligodendrocyte precursor cells ingest axons in the mouse neocortex
Proceedings of the National Academy of Sciences 2022cited by 142position: middledoi
Perisomatic Features Enable Efficient and Dataset Wide Cell-Type Classifications Across Large-Scale Electron Microscopy Volumes
bioRxiv (Cold Spring Harbor Laboratory) 2022cited by 23position: middledoi
Oligodendrocyte precursor cells prune axons in the mouse neocortex
bioRxiv (Cold Spring Harbor Laboratory) 2021cited by 19position: middledoi
Oligodendrocyte precursor cells prune axons in the mouse neocortex
Research Square 2021cited by 11position: middledoi
A Scalable and Modular Automated Pipeline for Stitching of Large Electron Microscopy Datasets
bioRxiv (Cold Spring Harbor Laboratory) 2021cited by 3position: middledoi
Confocal Bessel Beam Light-sheet and Expansion Microscopy for Axonal Connectomics of Mammalian Brains
Biophotonics Congress 2021 2021cited by 0position: middledoi
Single-cell transcriptomic evidence for dense intracortical neuropeptide networks
eLife 2019cited by 167position: middledoi
Single-Cell Transcriptomic Evidence for Dense Intracortical Neuropeptide Networks
bioRxiv (Cold Spring Harbor Laboratory) 2019cited by 8position: middledoi
Author response: Single-cell transcriptomic evidence for dense intracortical neuropeptide networks
2019cited by 1position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Forrest Collman · Allen Institute for Brain Science9 papers (2017–2024)Leila Elabbady · University of Washington5 papers (2019–2024)Ed S. Lein · Allen Institute for Brain Science4 papers (2019–2021)Stephen J Smith · Goddard Space Flight Center4 papers (2019–2021)Michael Hawrylycz · Allen Institute3 papers (2019–2019)Hongkui Zeng · Allen Institute for Brain Science3 papers (2019–2019)Bosiljka Tasic · Allen Institute for Brain Science3 papers (2019–2019)JoAnn Buchanan · Allen Institute for Brain Science3 papers (2021–2024)Trygve E. Bakken · Allen Institute for Brain Science3 papers (2019–2019)Nuno Maçarico da Costa · Allen Institute for Brain Science3 papers (2021–2024)Russel Torres · Allen Institute for Brain Science3 papers (2021–2024)Jeremy A. Miller · Indiana University Bloomington3 papers (2019–2019)Mary M. Maleckar · University of Oslo3 papers (2017–2018)Zizhen Yao · Allen Institute for Brain Science3 papers (2019–2019)Olga Gliko · Allen Institute for Brain Science3 papers (2019–2019)Jean Rossier · Centre National de la Recherche Scientifique3 papers (2019–2019)Lucas T. Graybuck · Allen Institute for Immunology3 papers (2019–2019)Uygar Sümbül · Allen Institute for Brain Science3 papers (2019–2019)Wei-Chung Allen Lee · Boston Children's Hospital2 papers (2023–2024)Gregory R. Johnson · Carnegie Mellon University2 papers (2017–2018)
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