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Ed S. Lein

Allen Institute for Brain Science · US
🔎 Find collaborators in Molecular Biology · Neurology →
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Area of research
Molecular Biology · Neurology
Research interest
Research interests include Single-cell and spatial transcriptomics, Neuroinflammation and Neurodegeneration Mechanisms, Cell Image Analysis Techniques, and Neural dynamics and brain function.
h-index
79
citations
51,281
works
285
NIH funding
primary concept
Biology
email

Recent publications

An Integrated Single-Cell and Epigenomic Resource for Comparative Analysis of the Basal Ganglia
bioRxiv (Cold Spring Harbor Laboratory) 2026cited by 1position: middledoi
Single-cell Multiome Analysis of Chromatin State and Transcriptome in the Human Basal Ganglia
bioRxiv (Cold Spring Harbor Laboratory) 2026cited by 1position: middledoi
The Caudate Nucleus Exhibits Distinct Pathology and Cell Type-Specific Responses Across Alzheimer’s Disease
bioRxiv (Cold Spring Harbor Laboratory) 2026cited by 0position: middledoi
HCN channels reveal conserved and divergent physiology in supragranular pyramidal neurons in primate species
Communications Biology 2026cited by 0position: middledoi
Cell type-selective AADC expression reduces motor deficits and dyskinesia in Parkinson’s disease mouse models
bioRxiv (Cold Spring Harbor Laboratory) 2026cited by 0position: middledoi
A Multimodal Single-Cell Epigenomic and 3D Genome Atlas of the Human Basal Ganglia
bioRxiv (Cold Spring Harbor Laboratory) 2026cited by 0position: middledoi
Enhancer-Based AAV Approach for Selective AADC Delivery Reduces Motor Symptoms and Dyskinesia in Parkinson’s Mouse Models
SSRN Electronic Journal 2026cited by 0position: middledoi
Morphoelectric Diversity and Specialization of Neuronal Cell Types in the Primate Striatum
bioRxiv (Cold Spring Harbor Laboratory) 2026cited by 0position: middledoi
Somatic cancer variants enriched in Alzheimer’s disease microglia-like cells drive inflammatory and proliferative states
Cell 2026cited by 0position: middledoi
Interneuron-specific dual-AAV <i>SCN1A</i> gene replacement corrects epileptic phenotypes in mouse models of Dravet syndrome
Science Translational Medicine 2025cited by 30position: middledoi
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage
Nature Methods 2025cited by 26position: middledoi
Enhancer AAVs for targeting spinal motor neurons and descending motor pathways in rodents and macaque
Cell Reports 2025cited by 19position: middledoi
Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex
Cell Genomics 2025cited by 15position: middledoi
Cross-species consensus atlas of the primate basal ganglia
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 8position: middledoi
Accelerating biomedical discoveries in brain health through transformative neuropathology of aging and neurodegeneration
Neuron 2025cited by 8position: middledoi
A molecular cell atlas of mouse lemur, an emerging model primate
Nature 2025cited by 8position: middledoi
AAV delivery of full-length SYNGAP1 rescues epileptic and behavioral phenotypes in a mouse model of SYNGAP1-related disorders
Molecular Therapy 2025cited by 7position: middledoi
A cross-species spatial transcriptomic atlas of the human and non-human primate basal ganglia
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 7position: middledoi
Mouse lemur cell atlas informs primate genes, physiology and disease
Nature 2025cited by 4position: middledoi
Technical and biological sources of noise confound multiplexed enhancer AAV screening
Nature Communications 2025cited by 4position: middledoi
AAV serotype PHP.eB achieves superior neuronal transduction efficiency compared to AAV9 in pigtail macaques following intracerebroventricular administration
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 3position: middledoi
AAV-PHP.eB achieves superior neuronal transduction over AAV9 in pigtail macaques following intracerebroventricular administration
Molecular Therapy — Methods & Clinical Development 2025cited by 2position: middledoi
MerQuaCo: a computational tool for quality control in image-based spatial transcriptomics
eLife 2025cited by 1position: middledoi
MerQuaCo: a computational tool for quality control in image-based spatial transcriptomics
eLife 2025cited by 1position: middledoi
Enhancer-AAVs allow genetic access to oligodendrocytes and diverse populations of astrocytes across species
eLife 2025cited by 1position: middledoi
Single-cell multiomic human brain atlas reveals regulatory drivers of cortical regionality
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 1position: middledoi
HCN channels reveal conserved and divergent physiology in supragranular pyramidal neurons in primate species
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 1position: middledoi
Cytosplore EvoViewer: Visual Analytics of Conserved Evolutionary Patterns in multi-species single-cell sequencing data
2025cited by 0position: middledoi
Enhancer-AAVs allow genetic access to oligodendrocytes and diverse populations of astrocytes across species
eLife 2025cited by 0position: middledoi
MerQuaCo: a computational tool for quality control in image-based spatial transcriptomics
eLife 2025cited by 0position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Jeremy A. Miller · Indiana University Bloomington39 papers (2013–2024)Rebecca D. Hodge · Allen Institute for Brain Science34 papers (2016–2025)Trygve E. Bakken · Allen Institute for Brain Science33 papers (2014–2025)Jonathan T. Ting · Allen Institute for Brain Science24 papers (2017–2025)Michael Hawrylycz · Allen Institute18 papers (2012–2024)Ryder P. Gwinn · EvergreenHealth15 papers (2017–2023)Christof Koch · Allen Institute for Brain Science15 papers (2018–2022)Hongkui Zeng · Allen Institute for Brain Science14 papers (2012–2020)Richard H. Scheuermann · National Institutes of Health14 papers (2016–2023)Brian D. Aevermann · Chan Zuckerberg Initiative (United States)14 papers (2016–2023)Brian Kalmbach · Allen Institute for Brain Science13 papers (2018–2025)Charles Cobbs · Swedish Medical Center13 papers (2018–2026)Sten Linnarsson · Karolinska Institutet12 papers (2017–2023)Kimberly A. Smith · Allen Institute for Brain Science12 papers (2012–2026)C. Dirk Keene · Seattle Pacific University11 papers (2018–2025)Brian Long · Seattle University11 papers (2017–2024)Bosiljka Tasic · Allen Institute for Brain Science10 papers (2017–2022)Peter Chong · Allen Institute for Brain Science9 papers (2018–2022)Jennie Close · Allen Institute for Brain Science9 papers (2017–2026)Boaz P. Levi · Allen Institute for Brain Science9 papers (2017–2025)
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