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Anthony Gitter

University of Wisconsin–Madison · US
Area of research
Molecular Biology · Computational Theory and Mathematics
Research interest
Research interests include Bioinformatics and Genomic Networks, Computational Drug Discovery Methods, Time Series Analysis and Forecasting, and Machine Learning in Materials Science.
h-index
29
citations
5,566
works
183
NIH funding
primary concept
email

Recent publications

Democratizing protein language model training, sharing and collaboration
Nature Biotechnology 2025cited by 5position: middledoi
Current and future directions in network biology
Bioinformatics Advances 2024cited by 92position: middledoi
Opportunities and obstacles for deep learning in biology and medicine
Journal of The Royal Society Interface 2018cited by 2,213position: middledoi
Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package
PLoS Computational Biology 2016cited by 188position: middledoi
The SDREM Method for Reconstructing Signaling and Regulatory Response Networks: Applications for Studying Disease Progression
Methods in molecular biology 2015cited by 6position: firstdoi
Studying and modelling dynamic biological processes using time-series gene expression data
Nature Reviews Genetics 2012cited by 514position: middledoi
DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data
BMC Systems Biology 2012cited by 139position: middledoi

Grants

Collaborative Research: BeeHive: A Cross-Problem Benchmarking Framework for Network Biology
NSF2233968$704,3682023–2027PIRePORTER
Collaborative Research: MFB: Integrating Deep Learning and High-throughput Experimentation to Rapidly Navigate Protein Fitness Landscapes for Non-native Enzyme Catalysis
NSF2226451$444,0382022–2026PIRePORTER
CAREER: Inference in temporal signaling and transcriptional data
NSF1553206$887,2302016–2022PIRePORTER

Frequent collaborators

Ziv Bar‐Joseph · Sanofi (France)3 papers (2012–2015)Sara J.C. Gosline · Endocrinology Northwest1 papers (2016–2016)William E. Devanny · Carnegie Mellon University1 papers (2012–2012)Jason Ernst · University of California, Los Angeles1 papers (2012–2012)Itamar Simon · Hebrew University of Jerusalem1 papers (2012–2012)Amanda J. Kedaigle · Massachusetts Institute of Technology1 papers (2016–2016)Shan Zhong · Fudan University1 papers (2012–2012)Ernest Fraenkel · Massachusetts Institute of Technology1 papers (2016–2016)Nurcan Tunçbağ · Massachusetts Institute of Technology1 papers (2016–2016)Anthony R. Soltis · Massachusetts Institute of Technology1 papers (2016–2016)Marcel H. Schulz · Goethe University Frankfurt1 papers (2012–2012)