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Pamela Ferretti

University of Chicago · US
Area of research
Molecular Biology · Infectious Diseases
Research interest
Research interests include Gut microbiota and health, Clostridium difficile and Clostridium perfringens research, Probiotics and Fermented Foods, and Genomics and Phylogenetic Studies.
h-index
17
citations
4,294
works
45
NIH funding
primary concept
email

Recent publications

Integration of 168,000 samples reveals global patterns of the human gut microbiome
Cell 2025cited by 92position: middledoi
Genomics of host–microbiome interactions in humans
Nature Reviews Genetics 2025cited by 9position: firstdoi
Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother’s milk
Nature Communications 2025cited by 6position: firstdoi
SPIRE: a Searchable, Planetary-scale mIcrobiome REsource
Nucleic Acids Research 2023cited by 87position: middledoi
Meconium Microbiome of Very Preterm Infants across Germany
mSphere 2022cited by 29position: middledoi
Towards the biogeography of prokaryotic genes
Nature 2021cited by 239position: middledoi
Diversity within species: interpreting strains in microbiomes
Nature Reviews Microbiology 2020cited by 467position: middledoi
Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome
Cell Host & Microbe 2018cited by 1,305position: firstdoi
Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life
Cell Host & Microbe 2018cited by 491position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Thea Van Rossum · European Molecular Biology Laboratory4 papers (2020–2023)Peer Bork · European Bioinformatics Institute4 papers (2020–2023)Oleksandr M. Maistrenko · Royal Netherlands Institute for Sea Research3 papers (2020–2023)Ran Blekhman · University of Minnesota System2 papers (2025–2025)Askarbek Orakov · Boston Children's Hospital2 papers (2021–2023)Shinichi Sunagawa · SIB Swiss Institute of Bioinformatics2 papers (2021–2023)Sofia K. Forslund · Mahindra and Mahindra Limited (India)2 papers (2021–2022)Daniel R. Mende · Virginia Tech2 papers (2021–2023)Thomas Schmidt · European Molecular Biology Laboratory2 papers (2021–2023)Ivica Letunić · European Molecular Biology Organization2 papers (2021–2023)Luís Pedro Coelho · Translational Research Institute2 papers (2021–2023)Michael Kuhn · Tata Steel (Netherlands)1 papers (2023–2023)Richard J. Abdill · University of Chicago1 papers (2025–2025) · 1 papers (2021–2021)Yiqian Duan · Fudan University1 papers (2023–2023)Ashwin Chetty · University of Chicago1 papers (2025–2025)Surya Tripathi · University of California, Berkeley1 papers (2018–2018)Sambhawa Priya · SRM Institute of Science and Technology1 papers (2025–2025)ROBERT FINN · European Bioinformatics Institute1 papers (2023–2023)Mikael Knip · and Helsinki University Hospital1 papers (2018–2018)