Area of research
Ecology · Molecular Biology
Research interest
Research interests include Biology, Metagenomics, Computational biology, Microbiome, Genome, and Genetics.
SPIRE: a Searchable, Planetary-scale mIcrobiome REsource
Critical Assessment of Metagenome Interpretation: the second round of challenges
Complex marine microbial communities partition metabolism of scarce resources over the diel cycle
GUNC: detection of chimerism and contamination in prokaryotic genomes
Towards the biogeography of prokaryotic genes
Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea
Microbial abundance, activity and population genomic profiling with mOTUs2
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
Environmental drivers of a microbial genomic transition zone in the ocean’s interior
Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean
Structure and function of the global ocean microbiome
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
Potential of fecal microbiota for early‐stage detection of colorectal cancer
Metagenomic species profiling using universal phylogenetic marker genes
Genomic variation landscape of the human gut microbiome
Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data