Area of research
Molecular Biology · Ecology
Research interest
Research interests include Genomics and Phylogenetic Studies, Bioinformatics and Genomic Networks, Microbial Community Ecology and Physiology, and Genetic diversity and population structure.
The Biodiversity Cell Atlas: mapping the tree of life at cellular resolution
Discovery of antimicrobial peptides in the global microbiome with machine learning
A global survey of prokaryotic genomes reveals the eco-evolutionary pressures driving horizontal gene transfer
Functional and evolutionary significance of unknown genes from uncultivated taxa
Comparison of gene clustering criteria reveals intrinsic uncertainty in pangenome analyses
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
Towards the biogeography of prokaryotic genes
Profiling cellular diversity in sponges informs animal cell type and nervous system evolution
Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
Microbial abundance, activity and population genomic profiling with mOTUs2
Advances and Applications in the Quest for Orthologs
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes
NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
Structure and function of the global topsoil microbiome
Function, evolution, and structure of J-domain proteins
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
Durable coexistence of donor and recipient strains after fecal microbiota transplantation
Standardized benchmarking in the quest for orthologs
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
STRING v10: protein–protein interaction networks, integrated over the tree of life
Whole-genome analyses resolve early branches in the tree of life of modern birds
Neuroprotection elicited by P2Y13 receptors against genotoxic stress by inducing DUSP2 expression and MAPK signaling recovery