Area of research
Molecular Biology · Spectroscopy
Research interest
Research interests include Bioinformatics and Genomic Networks, Biomedical Text Mining and Ontologies, Advanced Proteomics Techniques and Applications, and Machine Learning in Bioinformatics.
ProteoBench: the community-curated platform for comparing proteomics data analysis workflows
Opportunities and barriers in omics-based biomarker discovery for steatotic liver diseases
Single-cell atlas of transcriptomic vulnerability across multiple neurodegenerative and neuropsychiatric diseases
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks
Pharos 2023: an integrated resource for the understudied human proteome
Phosphorylation of SHP2 at Tyr62 Enables Acquired Resistance to SHP2 Allosteric Inhibitors in FLT3-ITD–Driven AML
Improved metagenome binning and assembly using deep variational autoencoders
Correction to ‘The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets’
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
TCRD and Pharos 2021: mining the human proteome for disease biology
Visualize omics data on networks with Omics Visualizer, a Cytoscape App
Visualize omics data on networks with Omics Visualizer, a Cytoscape App
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data
Unexplored therapeutic opportunities in the human genome
Erratum: Unexplored therapeutic opportunities in the human genome
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
Drug target ontology to classify and integrate drug discovery data
TIN-X: target importance and novelty explorer
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
Pharos: Collating protein information to shed light on the druggable genome
Standardized benchmarking in the quest for orthologs
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data
The SIDER database of drugs and side effects
Acetylation site specificities of lysine deacetylase inhibitors in human cells
STRING v10: protein–protein interaction networks, integrated over the tree of life
DISEASES: Text mining and data integration of disease–gene associations