Area of research
Molecular Biology · Ecology
Research interest
Research interests include Gut microbiota and health, Genomics and Phylogenetic Studies, Microbial Community Ecology and Physiology, and Clostridium difficile and Clostridium perfringens research.
Secondary bile acid production by gut bacteria promotes Western diet-associated colorectal cancer
ATF6 activation alters colonic lipid metabolism causing tumour-associated microbial adaptation
International consensus statement on microbiome testing in clinical practice
A realistic benchmark for differential abundance testing and confounder adjustment in human microbiome studies
Bacillamide D produced by Bacillus cereus from the mouse intestinal bacterial collection (miBC) is a potent cytotoxin in vitro
Specific Gut Microbiome Changes in Myelodysplastic Neoplasms Linked to Inflammation
Remodelling of the intestinal ecosystem during caloric restriction and fasting
Critical Assessment of Metagenome Interpretation: the second round of challenges
A faecal microbiota signature with high specificity for pancreatic cancer
Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO
Bacterial retrons encode phage-defending tripartite toxin–antitoxin systems
Calorie restriction improves metabolic state independently of gut microbiome composition: a randomized dietary intervention trial
Reporting guidelines for human microbiome research: the STORMS checklist
Unravelling the collateral damage of antibiotics on gut bacteria
Commensal Clostridiales strains mediate effective anti-cancer immune response against solid tumors
Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions
Metabolic models predict bacterial passengers in colorectal cancer
Changes in Plasma Short-Chain Fatty Acid Levels after Dietary Weight Loss among Overweight and Obese Adults over 50 Weeks
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
Extensive transmission of microbes along the gastrointestinal tract
Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
Microbial abundance, activity and population genomic profiling with mOTUs2
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes
Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies
Effects of Weight-Loss Interventions on Short-Chain Fatty Acid Concentrations in Blood and Feces of Adults: A Systematic Review
Publisher Correction: Enterotypes in the landscape of gut microbial community composition
Enterotypes in the landscape of gut microbial community composition
Towards standards for human fecal sample processing in metagenomic studies