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Ian T. Fiddes

10X Genomics (United States) · US
Area of research
Molecular Biology · Plant Science
Research interest
Research interests include Genomics and Phylogenetic Studies, Chromosomal and Genetic Variations, Genetic diversity and population structure, and RNA and protein synthesis mechanisms.
h-index
37
citations
19,113
works
74
NIH funding
primary concept
Biology
email

Recent publications

The complete sequence of a human genome
Science 2022cited by 3,266position: middledoi
Benchmarking challenging small variants with linked and long reads
Cell Genomics 2022cited by 204position: middledoi
A high-quality bonobo genome refines the analysis of hominid evolution
Nature 2021cited by 90position: middledoi
GENCODE 2021
Nucleic Acids Research 2020cited by 1,451position: middledoi
Progressive Cactus is a multiple-genome aligner for the thousand-genome era
Nature 2020cited by 637position: middledoi
Combinatorial single-cell CRISPR screens by direct guide RNA capture and targeted sequencing
Nature Biotechnology 2020cited by 480position: middledoi
A robust benchmark for detection of germline large deletions and insertions
Nature Biotechnology 2020cited by 478position: middledoi
Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility
Science 2020cited by 193position: middledoi
Single-cell sequencing of genomic DNA resolves sub-clonal heterogeneity in a melanoma cell line
Communications Biology 2020cited by 69position: middledoi
Transcriptional activity and strain-specific history of mouse pseudogenes
Nature Communications 2020cited by 37position: middledoi
Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution
Cell 2019cited by 618position: middledoi
Structurally Conserved Primate LncRNAs Are Transiently Expressed during Human Cortical Differentiation and Influence Cell-Type-Specific Genes
Stem Cell Reports 2019cited by 77position: middledoi
Resolving sub-clonal heterogeneity within cell-line growths by single cell sequencing genomic DNA
bioRxiv (Cold Spring Harbor Laboratory) 2019cited by 4position: middledoi
GENCODE reference annotation for the human and mouse genomes
Nucleic Acids Research 2018cited by 3,480position: middledoi
Nanopore sequencing and assembly of a human genome with ultra-long reads
Nature Biotechnology 2018cited by 2,089position: middledoi
Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis
Cell 2018cited by 562position: firstdoi
High-resolution comparative analysis of great ape genomes
Science 2018cited by 398position: middledoi
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci
Nature Genetics 2018cited by 328position: middledoi
Improved reference genome for the domestic horse increases assembly contiguity and composition
Communications Biology 2018cited by 285position: middledoi
Repeat associated mechanisms of genome evolution and function revealed by the <i>Mus caroli</i> and <i>Mus pahari</i> genomes
Genome Research 2018cited by 135position: middledoi
Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma
Cancer Cell 2017cited by 777position: middledoi
The UCSC Genome Browser database: 2018 update
Nucleic Acids Research 2017cited by 534position: middledoi
A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0)
GigaScience 2017cited by 24position: middledoi
Long-read sequence assembly of the gorilla genome
Science 2016cited by 395position: middledoi
Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification
Nature 2016cited by 176position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

David Haussler · Innovative Genomics Institute5 papers (2016–2020)Mark Diekhans · Directorate-General for Interpretation4 papers (2016–2020)Joel Armstrong · Santa Cruz County Office of Education3 papers (2016–2020)Vijay Kumar · Pennsylvania State University2 papers (2019–2020)Evan E. Eichler · Howard Hughes Medical Institute2 papers (2016–2019) · 2 papers (2019–2020) · 2 papers (2019–2020) · 2 papers (2019–2020)M. Grigorova · Cancer Research UK Cambridge Center2 papers (2019–2020)Shamoni Maheshwari · University of California, Davis2 papers (2019–2020)Sofie R. Salama · University of California, Santa Cruz2 papers (2019–2019)Paul A. Edwards · University of Cambridge2 papers (2019–2020)Benedict Paten · Broad Center2 papers (2016–2020)Claudia Catalanotti · National Laboratory of the Rockies2 papers (2019–2020) · 2 papers (2019–2020)Zev Kronenberg · Pacific Biosciences (United States)2 papers (2016–2019)David W. Craig · City Of Hope National Medical Center2 papers (2019–2020)John D. Carpten · City Of Hope National Medical Center2 papers (2019–2020)Jay Shendure · Howard Hughes Medical Institute1 papers (2016–2016)Max Hauessler · University of California, Santa Cruz1 papers (2019–2019)