Area of research
Molecular Biology · Ecology
Research interest
Research interests include Genomics and Phylogenetic Studies, Microbial Community Ecology and Physiology, Gut microbiota and health, and Gene expression and cancer classification.
A roadmap for equitable reuse of public microbiome data
Author Correction: A roadmap for equitable reuse of public microbiome data
Long-term mitigation of drought changes the functional potential and life-strategies of the forest soil microbiome involved in organic matter decomposition
Metadata harmonization–Standards are the key for a better usage of omics data for integrative microbiome analysis
COVID-19 pandemic reveals the peril of ignoring metadata standards
KBase: The United States Department of Energy Systems Biology Knowledgebase
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
MG-RAST version 4—lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis
Federation in genomics pipelines: techniques and challenges
MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function
Spatial scale drives patterns in soil bacterial diversity
The MG-RAST metagenomics database and portal in 2015
Divergent responses of viral and bacterial communities in the gut microbiome to dietary disturbances in mice
A RESTful API for Accessing Microbial Community Data for MG-RAST
Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains
The complete genome sequence for putative <scp>H</scp> <sub>2</sub> ‐ and <scp>S</scp> ‐oxidizer <scp> <i>C</i> </scp> <i>andidatus</i> Sulfuricurvum sp., assembled <i>de novo</i> from an aquifer‐derived metagenome
Genomic Standards Consortium Projects
Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants
MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment
Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis
Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes
Metagenomics - a guide from sampling to data analysis
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools
Unlocking the potential of metagenomics through replicated experimental design
Structure, fluctuation and magnitude of a natural grassland soil metagenome
Intestinal Tissues Induce an SNP Mutation in Pseudomonas aeruginosa That Enhances Its Virulence: Possible Role in Anastomotic Leak
From genomics to metagenomics
A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE
Short-read reading-frame predictors are not created equal: sequence error causes loss of signal
Bilateral NSF/BIO-BBSRC: Collaborative Research: ABI Development: A Metagenomic Exchange - enriching metagenomics analysis by synergistic harmonisation of MG-RAST and the EBI Metag
EAGER-NEON: Collaborative Research: Formation of a NEON Microbial Metagenomics Data Synthesis Working Group
Second Argonne Soils Workshop, Argonne National Laboratory, Argonne, IL, October 6-8, 2010