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Mark D’Souza

University of Chicago · US
Area of research
Molecular Biology · Ophthalmology
Research interest
Research interests include Genomics and Phylogenetic Studies, Gut microbiota and health, Retinal Diseases and Treatments, and Gene expression and cancer classification.
h-index
22
citations
4,904
works
51
NIH funding
primary concept
email

Recent publications

Fecal Microbial Profiles and Short-Chain Fatty Acid/Bile Acid Metabolomics in Patients With Age-Related Macular Degeneration: A Pilot Study
Investigative Ophthalmology & Visual Science 2025cited by 10position: middledoi
Fecal Butyrate and Deoxycholic Acid Concentrations Correlate With Mortality in Patients With Liver Disease
Gastro Hep Advances 2025cited by 5position: middledoi
Oral Metformin Inhibits Choroidal Neovascularization by Modulating the Gut-Retina Axis
Investigative Ophthalmology & Visual Science 2023cited by 21position: middledoi
Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma
Communications Medicine 2023cited by 14position: middledoi
Absence of Gut Microbiota Is Associated with RPE/Choroid Transcriptomic Changes Related to Age-Related Macular Degeneration Pathobiology and Decreased Choroidal Neovascularization
International Journal of Molecular Sciences 2022cited by 25position: middledoi
Using Advanced Bioinformatics Tools to Identify Novel Therapeutic Candidates for Age-Related Macular Degeneration
Translational Vision Science & Technology 2022cited by 18position: middledoi
High-Fat Diet Alters the Retinal Pigment Epithelium and Choroidal Transcriptome in the Absence of Gut Microbiota
Cells 2022cited by 14position: middledoi
<i>Bacteroidota</i> and <i>Lachnospiraceae</i> integration into the gut microbiome at key time points in early life are linked to infant neurodevelopment
Gut Microbes 2021cited by 83position: middledoi
Unique somatic variants in DNA from urine exosomes of individuals with bladder cancer
Molecular Therapy — Methods & Clinical Development 2021cited by 25position: middledoi
High-Fat Diet Alters the Retinal Transcriptome in the Absence of Gut Microbiota
Cells 2021cited by 18position: middledoi
Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources
Briefings in Bioinformatics 2018cited by 36position: middledoi
A RESTful API for Accessing Microbial Community Data for MG-RAST
PLoS Computational Biology 2015cited by 74position: middledoi
A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE
PLoS Computational Biology 2012cited by 90position: middledoi
Short-read reading-frame predictors are not created equal: sequence error causes loss of signal
BMC Bioinformatics 2012cited by 53position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Dinanath Sulakhe · University of Chicago10 papers (2018–2025)Bingqing Xie · The University of Texas Southwestern Medical Center8 papers (2018–2023)Dimitra Skondra · University of Chicago6 papers (2021–2025)Jason Xiao · University of Chicago4 papers (2021–2025)Eugene B. Chang · University of Illinois Chicago4 papers (2021–2023)Urooba Nadeem · Southwestern Medical Center4 papers (2021–2023)Melanie Spedale · University of Illinois Chicago3 papers (2022–2023)Andreas Wilke · Humboldt-Universität zu Berlin3 papers (2012–2015)Seenu M. Hariprasad · University of Chicago3 papers (2021–2025)Huaiying Lin · University of Chicago3 papers (2023–2025)Betty Theriault · University of Chicago3 papers (2022–2023)Jared Wilkening · Argonne National Laboratory3 papers (2012–2015)Ashley M. Sidebottom · University of Chicago3 papers (2023–2025)Folker Meyer · Essen University Hospital3 papers (2012–2015)Hugo Barba · University of Chicago3 papers (2022–2025)Kevin Keegan · Argonne National Laboratory2 papers (2012–2012)Anitha Sundararajan · University of Chicago2 papers (2025–2025)T. Conrad Gilliam · University of Chicago2 papers (2018–2021)Natalia Maltsev · University of Chicago2 papers (2018–2021)Travis Harrison · Precision for Medicine (United States)2 papers (2012–2015)