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Jo Vandesompele

Shanghai Cell Therapy Research Institute · BE
Area of research
Neurology · Cancer Research
Research interest
Research interests include Neuroblastoma Research and Treatments, Cancer-related molecular mechanisms research, Molecular Biology Techniques and Applications, and MicroRNA in disease regulation.
h-index
97
citations
75,517
works
801
NIH funding
primary concept
email

Recent publications

Human skeletal muscle fiber heterogeneity beyond myosin heavy chains
Nature Communications 2025cited by 41position: middledoi
Blood collection tube and RNA purification method recommendations for extracellular RNA transcriptome profiling
Nature Communications 2025cited by 15position: middledoi
Flexible methods for uncertainty estimation of digital PCR data
iScience 2025cited by 3position: middledoi
Polytect: an automatic clustering and labeling method for multicolor digital PCR data
NAR Genomics and Bioinformatics 2025cited by 2position: middledoi
Benchmarking digital PCR partition classification methods with empirical and simulated duplex data
Briefings in Bioinformatics 2024cited by 7position: middledoi
Therapy response monitoring in blood plasma from esophageal adenocarcinoma patients using cell-free DNA methylation profiling
Scientific Reports 2024cited by 3position: middledoi
Digital PCR threshold robustness analysis and optimization using <i>dipcensR</i>
Briefings in Bioinformatics 2024cited by 1position: middledoi
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision
Nature Methods 2023cited by 100position: middledoi
Digital PCR Partition Classification
Clinical Chemistry 2023cited by 23position: middledoi
Disclosing quantitative <scp>RT‐PCR</scp> raw data during manuscript submission: a call for action
Molecular Oncology 2023cited by 10position: middledoi
The RNA Atlas expands the catalog of human non-coding RNAs
Nature Biotechnology 2021cited by 161position: middledoi
MISpheroID: a knowledgebase and transparency tool for minimum information in spheroid identity
Nature Methods 2021cited by 83position: middledoi
The Digital MIQE Guidelines Update: Minimum Information for Publication of Quantitative Digital PCR Experiments for 2020
Clinical Chemistry 2020cited by 495position: middledoi
On the utility of RNA sample pooling to optimize cost and statistical power in RNA sequencing experiments
BMC Genomics 2020cited by 122position: middledoi
Cautionary Note on Contamination of Reagents Used for Molecular Detection of SARS-CoV-2
Clinical Chemistry 2020cited by 69position: middledoi
SPsimSeq: semi-parametric simulation of bulk and single-cell RNA-sequencing data
Bioinformatics 2020cited by 64position: middledoi
Correction to: On the utility of RNA sample pooling to optimize cost and statistical power in RNA sequencing experiments
BMC Genomics 2020cited by 26position: middledoi
The generation and use of recombinant extracellular vesicles as biological reference material
Nature Communications 2019cited by 160position: middledoi
The long noncoding RNA lncNB1 promotes tumorigenesis by interacting with ribosomal protein RPL35
Nature Communications 2019cited by 99position: middledoi
A mechanistic classification of clinical phenotypes in neuroblastoma
Science 2018cited by 334position: middledoi
Cross-Cohort Analysis Identifies a TEAD4–MYCN Positive Feedback Loop as the Core Regulatory Element of High-Risk Neuroblastoma
Cancer Discovery 2018cited by 192position: middledoi
The cancer-associated microprotein CASIMO1 controls cell proliferation and interacts with squalene epoxidase modulating lipid droplet formation
Oncogene 2018cited by 177position: middledoi
Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data
Genome biology 2018cited by 66position: lastdoi
Circulating microRNA biomarkers for metastatic disease in neuroblastoma patients
JCI Insight 2018cited by 31position: lastdoi
Expressed repetitive elements are broadly applicable reference targets for normalization of reverse transcription-qPCR data in mice
Scientific Reports 2018cited by 27position: middledoi
On determining the power of digital PCR experiments
Analytical and Bioanalytical Chemistry 2018cited by 4position: middledoi
Circulating microRNA biomarkers for metastatic disease in neuroblastoma patients
bioRxiv (Cold Spring Harbor Laboratory) 2018cited by 2position: lastdoi
EV-TRACK: transparent reporting and centralizing knowledge in extracellular vesicle research
Nature Methods 2017cited by 1,283position: middledoi
A unified censored normal regression model for qPCR differential gene expression analysis
PLoS ONE 2017cited by 11position: middledoi
Prognostic and Therapeutic Implications of Circulating Androgen Receptor Gene Copy Number in Prostate Cancer Patients Using Droplet Digital Polymerase Chain Reaction
Clinical Genitourinary Cancer 2017cited by 9position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Olivier Thas · University of Wollongong14 papers (2016–2025)Pieter Mestdagh · Ghent University9 papers (2012–2018)Matthijs Vynck · University of Wollongong9 papers (2016–2025)Frank Speleman · University of Padua7 papers (2013–2018)Johannes H. Schulte · Universitätsklinikum Tübingen6 papers (2012–2015)Ward De Spiegelaere · University of Wollongong5 papers (2023–2025) · 5 papers (2023–2025)Yao Chen · Jiangsu University4 papers (2023–2025) · 4 papers (2018–2020)David Gleerup · University of Wollongong4 papers (2023–2025)Antoon Lievens · University of Wollongong3 papers (2023–2025)Alexander Schramm · Klinik und Poliklinik für Kinder- und Jugendmedizin3 papers (2012–2014)Katleen De Preter · VIB-UGent Center for Medical Biotechnology3 papers (2013–2015)Kristina Althoff · German Cancer Research Center3 papers (2014–2015)Angelika Eggert · DKFZ-ZMBH Alliance3 papers (2013–2014) · 3 papers (2014–2015)Daniel R. Carter · Children's Cancer Institute Australia2 papers (2014–2015)Tania Nolan · University of Manchester2 papers (2013–2020) · 2 papers (2013–2017)Jean‐Christophe Marine · Cancer Research UK2 papers (2012–2016)