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Timothy J. O’Donnell

Hexagon (United Kingdom) · GB
Area of research
Immunology · Molecular Biology
Research interest
Research interests include Immunotherapy and Immune Responses, vaccines and immunoinformatics approaches, Natural Language Processing Techniques, and Monoclonal and Polyclonal Antibodies Research.
h-index
27
citations
4,175
works
129
NIH funding
primary concept
Medicine
email

Recent publications

OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization
Nature Methods 2024cited by 279position: middledoi
Reading the repertoire: Progress in adaptive immune receptor analysis using machine learning
Cell Systems 2024cited by 23position: firstdoi
NKG2A and HLA-E define an alternative immune checkpoint axis in bladder cancer
Cancer Cell 2022cited by 121position: middledoi
TGM4: an immunogenic prostate-restricted antigen
Journal for ImmunoTherapy of Cancer 2021cited by 24position: middledoi
Mapping Systemic Inflammation and Antibody Responses in Multisystem Inflammatory Syndrome in Children (MIS-C)
Cell 2020cited by 554position: middledoi
MHCflurry 2.0: Improved Pan-Allele Prediction of MHC Class I-Presented Peptides by Incorporating Antigen Processing
Cell Systems 2020cited by 437position: firstdoi
Shared Immunogenic Poly-Epitope Frameshift Mutations in Microsatellite Unstable Tumors
Cell 2020cited by 210position: middledoi
Bioinformatic methods for cancer neoantigen prediction
Progress in molecular biology and translational science 2019cited by 45position: middledoi
MHCflurry: Open-Source Class I MHC Binding Affinity Prediction
Cell Systems 2018cited by 426position: firstdoi
Predictive validity of NEDA in the 16- and 21-year follow-up from the pivotal trial of interferon beta-1b
Multiple Sclerosis Journal 2018cited by 27position: middledoi
MHCflurry: open-source class I MHC binding affinity prediction
bioRxiv (Cold Spring Harbor Laboratory) 2017cited by 26position: firstdoi
chemalot and chemalot_knime: Command line programs as workflow tools for drug discovery
Journal of Cheminformatics 2017cited by 24position: middledoi
Unsupervised Lexicon Discovery from Acoustic Input
Transactions of the Association for Computational Linguistics 2015cited by 96position: middledoi
Key mutations stabilize antigen‐binding conformation during affinity maturation of a broadly neutralizing influenza antibody lineage
Proteins Structure Function and Bioinformatics 2014cited by 40position: middledoi
Grammatical morphology as a source of early number word meanings
Proceedings of the National Academy of Sciences 2013cited by 127position: middledoi
Preconfiguration of the antigen-binding site during affinity maturation of a broadly neutralizing influenza virus antibody
Proceedings of the National Academy of Sciences 2012cited by 269position: middledoi
Cause of death in MS: long-term follow-up of a randomised cohort, 21 years after the start of the pivotal IFNβ-1b study
BMJ Open 2012cited by 43position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Alex Rubinsteyn · University of North Carolina at Chapel Hill4 papers (2017–2020)Uri Laserson · Ginkgo Bioworks, Inc. (United States)3 papers (2018–2021)Angelika B. Riemer · German Cancer Research Center2 papers (2017–2018) · 2 papers (2012–2018)Stuart D. Cook · Rutgers, The State University of New Jersey2 papers (2012–2018)Stephen C. Harrison · Boston Children's Hospital2 papers (2012–2014)Jeff Hammerbacher · Open Society Foundations2 papers (2017–2018)M. Anthony Moody · Duke University2 papers (2012–2014)Huafeng Xu · Harbin Medical University2 papers (2012–2014)Douglas S. Goodin · San Francisco VA Medical Center2 papers (2012–2018)Hua‐Xin Liao · Guangxi University2 papers (2012–2014)Gary Cutter · Epilepsy Foundation2 papers (2012–2018)Maria Bonsack · German Cancer Research Center2 papers (2017–2018)Aaron G. Schmidt · Technische Universität Dresden2 papers (2012–2014)Thomas B. Kepler · Bon Secours Mercy Health2 papers (2012–2014)David E. Shaw · D. E. Shaw Research2 papers (2012–2014)Anthony T. Reder · University of Illinois Chicago2 papers (2012–2018)Marcelo Kremenchutzky · McGill University Health Centre2 papers (2012–2018) · 1 papers (2012–2012)Gabriel Thomas · University of Manitoba1 papers (2017–2017)