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Simone Zuffa

University of San Diego · US
Area of research
Molecular Biology · Oncology
Research interest
Research interests include Gut microbiota and health, Metabolomics and Mass Spectrometry Studies, Drug Transport and Resistance Mechanisms, and Infant Nutrition and Health.
h-index
15
citations
1,319
works
63
NIH funding
primary concept
email

Recent publications

Enabling pan-repository reanalysis for big data science of public metabolomics data
Nature Communications 2025cited by 27position: middledoi
Discovery of metabolites prevails amid in-source fragmentation
Nature Metabolism 2025cited by 26position: middledoi
The International Space Station has a unique and extreme microbial and chemical environment driven by use patterns
Cell 2025cited by 17position: middledoi
Gut microbiota and derived metabolites mediate obstructive sleep apnea induced atherosclerosis
Gut Microbes 2025cited by 16position: middledoi
To Impute or Not To Impute in Untargeted Metabolomics─That is the Compositional Question
Journal of the American Society for Mass Spectrometry 2025cited by 10position: middledoi
Bridging Complexity and Accessibility in Metabolomics with MetaboApps
ChemRxiv 2025cited by 5position: middledoi
Microbiome-derived bile acid signatures in early life and their association with islet autoimmunity
Nature Communications 2025cited by 5position: middledoi
Environmental and maternal imprints on infant gut metabolic development
Cell Host & Microbe 2025cited by 4position: middledoi
Fecal microbial and metabolic signatures in children with very early onset inflammatory bowel disease
npj Biofilms and Microbiomes 2025cited by 4position: middledoi
The underappreciated diversity of bile acid modifications
Cell 2024cited by 184position: middledoi
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data
Nature Microbiology 2024cited by 109position: firstdoi
Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
Nature Protocols 2024cited by 58position: middledoi
Reverse metabolomics for the discovery of chemical structures from humans
Nature 2023cited by 162position: middledoi
Early-life differences in the gut microbiota composition and functionality of infants at elevated likelihood of developing autism spectrum disorder
Translational Psychiatry 2023cited by 68position: firstdoi
A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 5position: firstdoi
A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data
Research Square 2023cited by 4position: middledoi
Obesity and ethnicity alter gene expression in skin
Scientific Reports 2020cited by 22position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Pieter C. Dorrestein · University of Connecticut6 papers (2025–2025)Helena Mannochio-Russo · University of California San Diego4 papers (2025–2025)Haoqi Nina Zhao · University of Washington3 papers (2025–2025)Yasin El Abiead · University of California San Diego3 papers (2025–2025)Prajit Rajkumar · University of California San Diego2 papers (2025–2025)Andrés Mauricio Caraballo‐Rodríguez · University of California San Diego2 papers (2025–2025)Jonathan R. Swann · NIHR Southampton Biomedical Research Centre2 papers (2020–2023)Rob Knight · University of California San Diego2 papers (2025–2025)Ipsita Mohanty · University of California San Diego2 papers (2025–2025)Mingxun Wang · University of California, Riverside2 papers (2025–2025)Paulo Wender Portal Gomes · University of California San Diego2 papers (2025–2025)Shipei Xing · UC San Diego Health System2 papers (2025–2025)Kine Eide Kvitne · University of Oslo2 papers (2025–2025)Vincent Charron‐Lamoureux · University of California San Diego2 papers (2025–2025)Dennis D. Krutkin · San Diego State University1 papers (2025–2025)Renee Oles · University of California San Diego1 papers (2025–2025) · 1 papers (2025–2025)Antonio G. González · Universidad Europea Miguel de Cervantes1 papers (2025–2025)Thomas Payne · European Bioinformatics Institute1 papers (2025–2025)Gabriel G. Haddad · Rady Children's Hospital-San Diego1 papers (2025–2025)