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Zhe Zhang

Children's Hospital of Philadelphia · US
Area of research
Genetics · Molecular Biology
Research interest
Research interests include Genetic and phenotypic traits in livestock, Genetic Mapping and Diversity in Plants and Animals, Epigenetics and DNA Methylation, and Cancer-related molecular mechanisms research.
h-index
50
citations
8,820
works
484
NIH funding
primary concept
email

Recent publications

Genetic regulation of gene expression across multiple tissues in chickens
Nature Genetics 2025cited by 48position: middledoi
Integrating large-scale meta-GWAS and PigGTEx resources to decipher the genetic basis of 232 complex traits in pigs
National Science Review 2025cited by 15position: lastdoi
Integrating eQTL and genome-wide association studies to uncover additive and dominant regulatory circuits in pig uterine capacity
animal 2025cited by 4position: lastdoi
Near-complete genome assembly of allotetraploid Erianthus rockii reveals unique chromosome evolution and lineage-divergence trajectories in the Saccharum complex
Plant Communications 2025cited by 3position: middledoi
PRMT5 Maintains Homeostasis of the Intestinal Epithelium by Modulating Cell Proliferation and Survival
Advanced Science 2025cited by 2position: middledoi
Multi-dimensional annotation of porcine variants using genomic and epigenomic features in pigs
BMC Biology 2025cited by 1position: middledoi
Integrative pigGTEx resource with GWAS reveals genetic mechanism underlying semen quality in boars
Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology 2025cited by 1position: middledoi
Local Climate Adaptation in Chinese Indigenous Pig Genomes
Animals 2025cited by 1position: lastdoi
Integrating gene expression data via weighted multiple kernel ridge regression improved accuracy of genomic prediction
Genetics Selection Evolution 2025cited by 1position: middledoi
Mapping and functional characterization of structural variation in 1060 pig genomes
Genome biology 2024cited by 23position: middledoi
Integrating meta‐analysis of genome‐wide association study with Pig Genotype‐Tissue Expression resources uncovers the genetic architecture for age at first farrowing in pigs
Animal Research and One Health 2024cited by 8position: lastdoi
Improving the accuracy of genomic prediction in dairy cattle using the biologically annotated neural networks framework
Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology 2024cited by 8position: middledoi
Clinical features of Guillain-Barré syndrome and chronic inflammatory demyelinating polyradiculoneuritis associated with SLE
Lupus Science & Medicine 2024cited by 6position: middledoi
Evaluating three strategies of genome‐wide association analysis for integrating data from multiple populations
Animal Genetics 2024cited by 4position: lastdoi
Pig-eRNAdb: a comprehensive enhancer and eRNA dataset of pigs
Scientific Data 2024cited by 4position: middledoi
Integrating large‐scale meta‐analysis of genome‐wide association studies improve the genomic prediction accuracy for combined pig populations
Journal of Animal Breeding and Genetics 2024cited by 4position: lastdoi
An Atlas of Linkage Disequilibrium Across Species
bioRxiv (Cold Spring Harbor Laboratory) 2024cited by 4position: middledoi
OmiGA: A Toolkit for Ultra-efficient Molecular Trait Analysis in Complex Populations
bioRxiv (Cold Spring Harbor Laboratory) 2024cited by 4position: lastdoi
Capturing biological interactions improves predictive ability of complex traits via epistatic model
Research Square 2024cited by 2position: lastdoi
Analysis of Spatiotemporal Variation and Relationship to Land Use – Landscape Pattern of Pm2.5 and O3 in Typical Arid Zone
SSRN Electronic Journal 2024cited by 1position: lastdoi
Integrating Multiple Database Resources to Elucidate the Gene Flow in Southeast Asian Pig Populations
International Journal of Molecular Sciences 2024cited by 1position: lastdoi
Evaluation of the Breed Composition of Pork via Population Structure Analysis in Pigs
Animals 2024cited by 1position: lastdoi
A complete gap-free diploid genome in Saccharum complex and the genomic footprints of evolution in the highly polyploid Saccharum genus
Nature Plants 2023cited by 73position: middledoi
PigBiobank: a valuable resource for understanding genetic and biological mechanisms of diverse complex traits in pigs
Nucleic Acids Research 2023cited by 65position: lastdoi
The gut metabolite 3-hydroxyphenylacetic acid rejuvenates spermatogenic dysfunction in aged mice through GPX4-mediated ferroptosis
Microbiome 2023cited by 60position: lastdoi
Identification of New Candidate Genes Related to Semen Traits in Duroc Pigs through Weighted Single-Step GWAS
Animals 2023cited by 23position: middledoi
The ChickenGTEx pilot analysis: a reference of regulatory variants across 28 chicken tissues
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 21position: middledoi
Stromal BMP signaling regulates mucin production in the large intestine via interleukin-1/17
Science Advances 2023cited by 17position: middledoi
Genome-Wide Association Study Meta-Analysis Elucidates Genetic Structure and Identifies Candidate Genes of Teat Number Traits in Pigs
International Journal of Molecular Sciences 2023cited by 16position: middledoi
Diclofenac and eugenol hybrid with enhanced anti-inflammatory activity through activating HO-1 and inhibiting NF-κB pathway in vitro and in vivo
European Journal of Medicinal Chemistry 2023cited by 15position: middledoi

Grants

Collaborative Research: CyberTraining Implementation Medium: Broadening Adoption of Cyberinfrastructure and Geospatial Artificial Intelligence for Disaster Management
NSF2519476$773,0902025–2029PIRePORTER
Collaborative Research: Conference: NAIRR Pilot Expansion: FA1:Utilizing NAIRR Pilot Resources for Building Sustainable Blue Economy
NSF2526748$199,1062025–2027PIRePORTER
CAREER: A Cyberinfrastructure Enabled Hybrid Spatial Decision Support System for Improving Coastal Resilience to Flood Risks
NSF2339174$568,3022024–2029PIRePORTER
Collaborative Research: CyberTraining: Implementation: Small: Broadening Adoption of Cyberinfrastructure and Research Workforce Development for Disaster Management
NSF2321069$454,8472023–2026PIRePORTER
Collaborative Research: Conference: Geospatial Cyberinfrastructure Workshop: Building High-Performance, Ethical, and Secured Geospatial Software
NSF2330330$25,0202023–2024PIRePORTER
NSF Convergence Accelerator Track E: Combining high-resolution climate simulations with ocean biogeochemistry, fisheries and decision-making models to improve sustainable fisheries
NSF2137684$749,5482021–2024PIRePORTER

Frequent collaborators

Jiaqi Li · University of California, Davis45 papers (2012–2024)Xiaolong Yuan · South China Agricultural University40 papers (2017–2024)Hao Zhang · South China Agricultural University35 papers (2014–2023)Jinyan Teng · South China Agricultural University28 papers (2018–2025)Shaopan Ye · South China Agricultural University23 papers (2018–2024)Shuqi Diao · South China Agricultural University21 papers (2018–2025)Jiaqi Li · University of Bern21 papers (2018–2025)Zitao Chen · South China Agricultural University17 papers (2018–2023)Ning Gao · Jiangsu University of Science and Technology16 papers (2014–2024)Yingting He · South China Agricultural University13 papers (2018–2023)Qing Lin · Columbia University13 papers (2021–2025)Zanmou Chen · South China Agricultural University13 papers (2015–2021)Shuwen Huang · South China Agricultural University11 papers (2018–2024)Xiangchun Pan · South China Agricultural University11 papers (2019–2024)Zhiting Xu · The First Affiliated Hospital, Sun Yat-sen University11 papers (2019–2025)Yahui Gao · South China Agricultural University10 papers (2023–2025)Xiquan Zhang · South China Agricultural University10 papers (2016–2020)Xiaodian Cai · South China Agricultural University10 papers (2022–2024)Xiangdong Ding · South China Agricultural University9 papers (2012–2024)Lingzhao Fang · South China Agricultural University9 papers (2022–2025)