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Shaopan Ye

South China Agricultural University · CN
Area of research
Genetics · Ecology
Research interest
Research focused on Imputation (statistics) and Single-nucleotide polymorphism, with related work in Genome-wide association study, Litter, Candidate gene. Notable publications include 'Using imputation-based whole-genome sequencing data to improve the accuracy of genomic prediction for combined populations in pigs', 'Imputation from SNP chip to sequence: a case study in a Chinese indigenous chicken population', and 'Genome-Wide Association Study for Reproductive Traits in a Duroc Pig Population'.
h-index
citations
749
works
25
NIH funding
primary concept
email

Recent publications

Capturing biological interactions improves predictive ability of complex traits via epistatic model
Research Square 2024cited by 2position: middledoi
Incorporating genomic annotation into single-step genomic prediction with imputed whole-genome sequence data
Journal of Integrative Agriculture 2022cited by 13position: middledoi
Insights into the architecture of human-induced polygenic selection in Duroc pigs
Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology 2022cited by 11position: middledoi
Polymorphisms of AMY1A gene and their association with growth, carcass traits and feed intake efficiency in chickens
Genomics 2021cited by 26position: middledoi
Identifying the complex genetic architecture of growth and fatness traits in a Duroc pig population
Journal of Integrative Agriculture 2021cited by 20position: middledoi
Exploring the genetic features and signatures of selection in South China indigenous pigs
Journal of Integrative Agriculture 2021cited by 13position: middledoi
Multi-omics-data-assisted genomic feature markers preselection improves the accuracy of genomic prediction
Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology 2020cited by 62position: firstdoi
New Insights From Imputed Whole-Genome Sequence-Based Genome-Wide Association Analysis and Transcriptome Analysis: The Genetic Mechanisms Underlying Residual Feed Intake in Chickens
Frontiers in Genetics 2020cited by 40position: firstdoi
Pre-selecting markers based on fixation index scores improved the power of genomic evaluations in a combined Yorkshire pig population
animal 2020cited by 22position: firstdoi
Optimizing genomic prediction model given causal genes in a dairy cattle population
Journal of Dairy Science 2020cited by 20position: middledoi
Using imputation-based whole-genome sequencing data to improve the accuracy of genomic prediction for combined populations in pigs
Genetics Selection Evolution 2019cited by 112position: middledoi
Genome-Wide Association Study for Reproductive Traits in a Duroc Pig Population
Animals 2019cited by 73position: middledoi
Strategies for Obtaining and Pruning Imputed Whole-Genome Sequence Data for Genomic Prediction
Frontiers in Genetics 2019cited by 54position: firstdoi
Genome-wide association studies for the number of animals born alive and dead in duroc pigs
Theriogenology 2019cited by 35position: middledoi
Genetic Diversity of Indigenous Pigs from South China Area Revealed by SNP Array
Animals 2019cited by 30position: middledoi
Dynamic DNA methylation of ovaries during pubertal transition in gilts
BMC Genomics 2019cited by 17position: middledoi
Accuracy of whole genome prediction with single-step GBLUP in a Chinese yellow-feathered chicken population
Livestock Science 2019cited by 15position: middledoi
Genome-Wide DNA Methylation Analysis of Hypothalamus During the Onset of Puberty in Gilts
Frontiers in Genetics 2019cited by 13position: middledoi
Genome-wide DNA methylation analysis of pituitaries during the initiation of puberty in gilts
PLoS ONE 2019cited by 7position: middledoi
New insights from genome-wide association analysis using imputed whole-genome sequence: the genetic mechanisms underlying residual feed intake in chickens
Research Square 2019cited by 1position: firstdoi
Imputation from SNP chip to sequence: a case study in a Chinese indigenous chicken population
Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology 2018cited by 77position: firstdoi
Comparison of genotype imputation strategies using a combined reference panel for chicken population
animal 2018cited by 28position: firstdoi
Genome-wide association study on chicken carcass traits using sequence data imputed from SNP array
Journal of Applied Genetics 2018cited by 21position: middledoi
Genomic Prediction of Complex Phenotypes Using Genic Similarity Based Relatedness Matrix
Frontiers in Genetics 2018cited by 19position: middledoi
Genome wide association study on feed conversion ratio using imputed sequence data in chickens
Asian-Australasian Journal of Animal Sciences 2018cited by 18position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Zhe Zhang · Children's Hospital of Philadelphia23 papers (2018–2024)Xiaolong Yuan · South China Agricultural University18 papers (2018–2022)Hao Zhang · South China Agricultural University14 papers (2018–2021)Jiaqi Li · University of California, Davis14 papers (2018–2022)Zitao Chen · South China Agricultural University12 papers (2019–2022)Jinyan Teng · South China Agricultural University11 papers (2018–2024)Shuwen Huang · South China Agricultural University10 papers (2018–2024)Xiquan Zhang · South China Agricultural University10 papers (2018–2022)Ning Gao · Jiangsu University of Science and Technology9 papers (2018–2024)Zanmou Chen · South China Agricultural University9 papers (2018–2021)Shuqi Diao · South China Agricultural University9 papers (2019–2022)Jiaqi Li · University of Bern5 papers (2018–2024)Jiaying Wang · South China Agricultural University4 papers (2018–2024)Yingting He · South China Agricultural University4 papers (2018–2019)Rongrong Zheng · South China Agricultural University3 papers (2019–2020)Zhiting Xu · The First Affiliated Hospital, Sun Yat-sen University3 papers (2019–2022)Qin Zhang · Shenyang Pharmaceutical University3 papers (2019–2024)Hao Zhang · South China Agricultural University2 papers (2019–2022)Xiangdong Ding · South China Agricultural University2 papers (2020–2020)J. Li · South China Agricultural University2 papers (2018–2020)