← back to search

Carl Baker

Seattle University · US
Area of research
Genetics · Plant Science
Research interest
Research interests include Genomic variations and chromosomal abnormalities, Chromosomal and Genetic Variations, Genomics and Rare Diseases, and Genomics and Phylogenetic Studies.
h-index
57
citations
23,787
works
90
NIH funding
primary concept
Biology
email

Recent publications

A draft human pangenome reference
Nature 2023cited by 1,117position: middledoi
Pangenome graph construction from genome alignments with Minigraph-Cactus
Nature Biotechnology 2023cited by 296position: middledoi
Recombination between heterologous human acrocentric chromosomes
Nature 2023cited by 139position: middledoi
Increased mutation and gene conversion within human segmental duplications
Nature 2023cited by 109position: middledoi
Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome
Cell Reports Methods 2023cited by 6position: middledoi
The structure, function and evolution of a complete human chromosome 8
Nature 2021cited by 375position: middledoi
A high-quality bonobo genome refines the analysis of hominid evolution
Nature 2021cited by 90position: middledoi
Evidence for opposing selective forces operating on human-specific duplicated TCAF genes in Neanderthals and humans
Nature Communications 2021cited by 26position: middledoi
Alpha Satellite Insertion Close to an Ancestral Centromeric Region
Molecular Biology and Evolution 2021cited by 6position: middledoi
An evolutionary driver of interspersed segmental duplications in primates
Genome biology 2020cited by 53position: middledoi
An evolutionary driver of interspersed segmental duplications in primates
Figshare 2020cited by 0position: middledoi
Improved assembly and variant detection of a haploid human genome using single‐molecule, high‐fidelity long reads
Annals of Human Genetics 2019cited by 144position: middledoi
Adaptive archaic introgression of copy number variants and the discovery of previously unknown human genes
Science 2019cited by 92position: middledoi
High-resolution comparative analysis of great ape genomes
Science 2018cited by 398position: middledoi
The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution
Nature Genetics 2018cited by 323position: middledoi
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model
Molecular Autism 2018cited by 170position: middledoi
Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes
Genetics in Medicine 2018cited by 146position: middledoi
Recurrent structural variation, clustered sites of selection, and disease risk for the complement factor H ( <i>CFH</i> ) gene family
Proceedings of the National Academy of Sciences 2018cited by 70position: middledoi
Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution
Nature Genetics 2018cited by 10position: middledoi
The evolution and population diversity of human-specific segmental duplications
Nature Ecology & Evolution 2017cited by 182position: middledoi
The birth of a human-specific neural gene by incomplete duplication and gene fusion
Genome biology 2017cited by 59position: middledoi
A genotype-first approach identifies an intellectual disability-overweight syndrome caused by PHIP haploinsufficiency
European Journal of Human Genetics 2017cited by 57position: middledoi
Long-read sequence assembly of the gorilla genome
Science 2016cited by 395position: middledoi
Emergence of a Homo sapiens-specific gene family and chromosome 16p11.2 CNV susceptibility
Nature 2016cited by 132position: middledoi
Excess of rare, inherited truncating mutations in autism
Nature Genetics 2015cited by 632position: middledoi
Global diversity, population stratification, and selection of human copy-number variation
Science 2015cited by 378position: middledoi
Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA
The American Journal of Human Genetics 2015cited by 290position: middledoi
Extreme selective sweeps independently targeted the X chromosomes of the great apes
Proceedings of the National Academy of Sciences 2015cited by 91position: middledoi
Maternal Modifiers and Parent-of-Origin Bias of the Autism-Associated 16p11.2 CNV
The American Journal of Human Genetics 2015cited by 67position: middledoi
Disruptive CHD8 Mutations Define a Subtype of Autism Early in Development
Cell 2014cited by 811position: middledoi

Grants

Government Binding Theory and the Projection Problem
NSF8318518$73,4471984–1986PIRePORTER
Syntactic Theory and the Projection Problem
NSF7924672$57,9291980–1982PIRePORTER

Frequent collaborators

Evan E. Eichler · Howard Hughes Medical Institute22 papers (2012–2021)John Huddleston · Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa8 papers (2013–2020)Katherine M. Munson · University of Washington8 papers (2016–2021)Maika Malig · ID Genomics (United States)7 papers (2012–2020)Stuart Cantsilieris · Monash University6 papers (2017–2021)Bradley J. Nelson · Saint Xavier University6 papers (2015–2019)Bradley P. Coe · Women's Hospital5 papers (2012–2018)Melanie Sorensen · Seattle University5 papers (2018–2021)Raphael Bernier · University of Birmingham5 papers (2013–2018)Kendra Hoekzema · Oregon State University5 papers (2015–2021)Holly A. Feser Stessman · Creighton University4 papers (2014–2017)Archana N. Raja · Stanford Medicine4 papers (2015–2017)Richard K. Wilson · Nationwide Children's Hospital4 papers (2012–2018)Michael Duyzend · George Washington University4 papers (2015–2018)Santhosh Girirajan · Pennsylvania State University4 papers (2012–2020)AnneMarie E. Welch · Seattle University4 papers (2018–2021)PingHsun Hsieh · University of Washington4 papers (2019–2021)Mario Ventura · University of Bari Aldo Moro4 papers (2013–2020)Deborah A. Nickerson · University of Washington4 papers (2012–2018)Mitchell R. Vollger · University of Utah3 papers (2019–2021)