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Saswata Karmakar

University of Idaho · US
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Area of research
Molecular Biology
Research interest
Research interests include DNA, Chemistry, Computational biology, Oligonucleotide, Sequence (biology), and Nucleic acid.
h-index
citations
269
works
20
NIH funding
primary concept
email

Recent publications

Serine-γPNA, Invader probes, and chimeras thereof: three probe chemistries that enable sequence-unrestricted recognition of double-stranded DNA
Organic & Biomolecular Chemistry 2022cited by 7position: middledoi
Factors Impacting Invader-Mediated Recognition of Double-Stranded DNA
Molecules 2022cited by 4position: middledoi
Recognition of double-stranded DNA using LNA-modified toehold Invader probes
Organic & Biomolecular Chemistry 2021cited by 9position: middledoi
Nicked Invader probes: multistranded and sequence-unrestricted recognition of double-stranded DNA
Organic & Biomolecular Chemistry 2021cited by 4position: middledoi
Impact of non-nucleotidic bulges on recognition of mixed-sequence dsDNA by pyrene-functionalized Invader probes
Organic & Biomolecular Chemistry 2020cited by 1position: middledoi
Head-to-head comparison of LNA, <sup>MP</sup>γPNA, INA and Invader probes targeting mixed-sequence double-stranded DNA
Organic & Biomolecular Chemistry 2019cited by 18position: middledoi
Recognition of mixed-sequence DNA targets using spermine-modified Invader probes
Organic & Biomolecular Chemistry 2019cited by 2position: middledoi
Synthesis and biophysical characterization of oligonucleotides modified with O2′-alkylated RNA monomers featuring substituted pyrene moieties
Organic & Biomolecular Chemistry 2018cited by 4position: firstdoi
25 years and still going strong: 2′-<i>O</i>-(pyren-1-yl)methylribonucleotides – versatile building blocks for applications in molecular biology, diagnostics and materials science
Organic & Biomolecular Chemistry 2017cited by 9position: lastdoi
Recognition of mixed-sequence DNA using double-stranded probes with interstrand zipper arrangements of O2′-triphenylene- and coronene-functionalized RNA monomers
Organic & Biomolecular Chemistry 2017cited by 6position: firstdoi
Invader probes: harnessing the energy of intercalation to facilitate recognition of chromosomal DNA for diagnostic applications
Chemical Science 2015cited by 29position: middledoi
Bulged Invader probes: activated duplexes for mixed-sequence dsDNA recognition with improved thermodynamic and kinetic profiles
Chemical Communications 2015cited by 18position: middledoi
Mixed-Sequence Recognition of Double-Stranded DNA Using Enzymatically Stable Phosphorothioate Invader Probes
Molecules 2015cited by 7position: middledoi
Recognition of double-stranded DNA using energetically activated duplexes with interstrand zippers of 1-, 2- or 4-pyrenyl-functionalized <i>O</i>2′-alkylated RNA monomers
Organic & Biomolecular Chemistry 2014cited by 25position: firstdoi
Self-Assembled Monolayers of Thiols Adsorbed on Au/ZnO-Functionalized Silica Nanosprings: Photoelectron Spectroscopy-Analysis and Detection of Vaporized Explosives
ACS Applied Materials & Interfaces 2014cited by 17position: middledoi
Identification and Characterization of Second-Generation Invader Locked Nucleic Acids (LNAs) for Mixed-Sequence Recognition of Double-Stranded DNA
The Journal of Organic Chemistry 2013cited by 32position: middledoi
Sandwich assay for mixed-sequence recognition of double-stranded DNA: Invader-based detection of targets specific to foodborne pathogens
Chemical Communications 2013cited by 20position: middledoi
DNA strands with alternating incorporations of LNA and 2′-O-(pyren-1-yl)methyluridine: SNP-discriminating RNA detection probes
Chemical Science 2013cited by 20position: firstdoi
Recognition of Mixed-Sequence DNA Duplexes: Design Guidelines for Invaders Based on 2′-<i>O</i>-(Pyren-1-yl)methyl-RNA Monomers
The Journal of Organic Chemistry 2013cited by 19position: firstdoi
Invaders: Recognition of Double‐Stranded DNA by Using Duplexes Modified with Interstrand Zippers of 2′‐<i>O</i>‐(Pyren‐1‐yl)methyl‐ribonucleotides
ChemBioChem 2013cited by 18position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Patrick J. Hrdlicka · University of Idaho20 papers (2013–2022)Dale C. Guenther · University of Idaho12 papers (2013–2021)Raymond G. Emehiser · University of Idaho6 papers (2018–2022)Bradley C. Gibbons · University of Idaho3 papers (2014–2018)Shiva P. Adhikari · University of Idaho3 papers (2019–2021)Brooke A. Anderson · University of Idaho2 papers (2013–2015)Sujay P. Sau · University of Idaho2 papers (2013–2013) · 2 papers (2013–2015) · 2 papers (2013–2014) · 2 papers (2013–2015)Ishwar Niraula · University of Idaho1 papers (2014–2014)Giancarlo Corti · University of Idaho1 papers (2014–2014)Eric Hall · University of Idaho1 papers (2019–2019)Wei Guo · California Institute of Technology1 papers (2015–2015)Tyler Horrocks · University of Idaho1 papers (2018–2018)Blaise Alexis Fouetio Kengne · University of Idaho1 papers (2014–2014)Philip Vukelich · University of Idaho1 papers (2021–2021)Raman Bahal · University of Connecticut1 papers (2022–2022) · 1 papers (2013–2013) · 1 papers (2014–2014)
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