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Ahmed Mahfouz

Leiden University · NL
Area of research
Molecular Biology · Biophysics
Research interest
Research interests include Single-cell and spatial transcriptomics, Cell Image Analysis Techniques, RNA Research and Splicing, and Gene expression and cancer classification.
h-index
37
citations
8,196
works
195
NIH funding
primary concept
email

Recent publications

Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 3position: middledoi
Optimized summary-statistic-based single-cell eQTL meta-analysis
Scientific Reports 2025cited by 2position: middledoi
SIRV: spatial inference of RNA velocity at the single-cell resolution
NAR Genomics and Bioinformatics 2024cited by 31position: lastdoi
A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain
Nature Communications 2021cited by 234position: middledoi
Eleven grand challenges in single-cell data science
Genome biology 2020cited by 1,402position: middledoi
The single-cell eQTLGen consortium
eLife 2020cited by 242position: middledoi
Author response: The single-cell eQTLGen consortium
2020cited by 4position: middledoi
Conserved cell types with divergent features in human versus mouse cortex
Nature 2019cited by 1,933position: middledoi
12 Grand Challenges in Single-Cell Data Science
2019cited by 7position: middledoi
12 Grand challenges in single-cell data science
2019cited by 5position: middledoi
12 Grand challenges in single-cell data science
2019cited by 2position: middledoi
12 Grand Challenges in Single-Cell Data Science
2019cited by 1position: middledoi
Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells
Nature Biotechnology 2018cited by 367position: middledoi
Conserved cell types with divergent features between human and mouse cortex
bioRxiv (Cold Spring Harbor Laboratory) 2018cited by 38position: middledoi
Gene co-expression analysis identifies brain regions and cell types involved in migraine pathophysiology: a GWAS-based study using the Allen Human Brain Atlas
Human Genetics 2016cited by 59position: middledoi
Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings
Methods 2014cited by 61position: firstdoi

Grants

No grants ingested yet.

Frequent collaborators

Marcel Reinders · University of Maryland, College Park3 papers (2014–2025)Marc Jan Bonder · European Bioinformatics Institute2 papers (2020–2020)Matthias Heinig · IHS Markit (United States)2 papers (2020–2020)Pim van der Harst · IHS Markit (United States)2 papers (2020–2020)Boudewijn P. F. Lelieveldt · University of Birmingham2 papers (2014–2024) · 2 papers (2020–2020)Martijn C. Nawijn · Dialyse Centrum Groningen2 papers (2020–2020) · 2 papers (2020–2020)Joseph E. Powell · Garvan Institute of Medical Research2 papers (2020–2020)Monique G.P. van der Wijst · University Medical Center Groningen2 papers (2020–2020)Lude Franke · IHS Markit (United States)2 papers (2020–2020)Fabian J. Theis · University of Lübeck2 papers (2020–2020)Youssef Idaghdour · New York University2 papers (2020–2020)Oliver Stegle · Institut thématique Génétique, génomique et bioinformatique2 papers (2020–2020)Gosia Trynka · Wellcome Sanger Institute2 papers (2020–2020)CJ Ye · Parker Institute for Cancer Immunotherapy2 papers (2020–2020)Steven A. Sloan · Emory University1 papers (2018–2018) · 1 papers (2025–2025)Anoushka Joglekar · Cornell University1 papers (2018–2018)Chung-Chau Hon · Institut Pasteur1 papers (2020–2020)