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Danielle J. Ingle

Australian National University · AU
Area of research
Food Science · Molecular Medicine
Research interest
Research interests include Biology, Antibiotic resistance, Typhoid fever, Salmonella typhi, Shigellosis, and Shigella.
h-index
citations
984
works
14
NIH funding
primary concept
email

Recent publications

Parameters for one health genomic surveillance of Escherichia coli from Australia
Nature Communications 2025cited by 33position: middledoi
Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi
Genome Medicine 2025cited by 2position: firstdoi
Surveillance of travel-associated isolates elucidates the diversity of non-pandemic Vibrio cholerae
Microbial Genomics 2024cited by 4position: middledoi
Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes
eLife 2023cited by 110position: middledoi
The evolution and international spread of extensively drug resistant Shigella sonnei
Nature Communications 2023cited by 70position: middledoi
Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak in Australia: a genomic epidemiological analysis
The Lancet Microbe 2022cited by 58position: middledoi
Whole genome sequence analysis of Salmonella Typhi in Papua New Guinea reveals an established population of genotype 2.1.7 sensitive to antimicrobials
PLoS neglected tropical diseases 2022cited by 8position: middledoi
Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei
Nature Communications 2021cited by 106position: middledoi
GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure
BMC Genomics 2020cited by 13position: middledoi
Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia
Clinical Infectious Diseases 2019cited by 100position: firstdoi
Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers
PLoS neglected tropical diseases 2019cited by 94position: firstdoi
Dynamics of antimicrobial resistance in intestinal Escherichia coli from children in community settings in South Asia and sub-Saharan Africa
Nature Microbiology 2018cited by 120position: firstdoi
EspL is a bacterial cysteine protease effector that cleaves RHIM proteins to block necroptosis and inflammation
Nature Microbiology 2017cited by 183position: middledoi
Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward
Microbial Genomics 2016cited by 83position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Kathryn E. Holt · London School of Hygiene & Tropical Medicine7 papers (2016–2022)Deborah A. Williamson · Wake Forest University4 papers (2019–2022)Benjamin P. Howden · Human Growth Foundation4 papers (2019–2024)Nicholas R. Thomson · University of London3 papers (2021–2024)Stephen Baker · UPMC Hillman Cancer Center2 papers (2016–2021) · 2 papers (2019–2024)Claire Jenkins · University of Cambridge2 papers (2021–2023)Zoe A. Dyson · London School of Hygiene & Tropical Medicine2 papers (2019–2022)Christopher K. Fairley · William Peace University2 papers (2019–2022)François‐Xavier Weill · Institut Pasteur2 papers (2021–2023)Kate S. Baker · University of Cambridge2 papers (2021–2023)Timothy J. Dallman · Utrecht University2 papers (2019–2021)Ryan R. Wick · The University of Melbourne2 papers (2016–2020)Marcus Y. Chen · Human Growth Foundation2 papers (2019–2022)Jane Hawkey · London School of Hygiene & Tropical Medicine2 papers (2016–2021)Rebecca J. Bengtsson · University of Edinburgh2 papers (2021–2023)Eric P. F. Chow · The University of Melbourne2 papers (2019–2022) · 1 papers (2017–2017)Kalani Paranagama · Monash University1 papers (2021–2021)James M. Murphy · The University of Melbourne1 papers (2017–2017)