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Cindy T. J. van Velthoven

Allen Institute for Brain Science · US
Area of research
Molecular Biology · Neurology
Research interest
Research interests include Single-cell and spatial transcriptomics, Neuroinflammation and Neurodegeneration Mechanisms, Mesenchymal stem cell research, and Neonatal and fetal brain pathology.
h-index
45
citations
8,012
works
88
NIH funding
primary concept
Biology
email

Recent publications

Genoarchitecture and input–output organization of the mouse basal ganglia and thalamic parafascicular nucleus
Nature Neuroscience 2026cited by 0position: middledoi
Brain-wide cell-type-specific transcriptomic signatures of healthy ageing in mice
Nature 2025cited by 102position: middledoi
Enhancer AAVs for targeting spinal motor neurons and descending motor pathways in rodents and macaque
Cell Reports 2025cited by 19position: middledoi
Continuous cell-type diversification in mouse visual cortex development
Nature 2025cited by 15position: middledoi
Transcriptomic and spatial organization of telencephalic GABAergic neurons
Nature 2025cited by 13position: firstdoi
The new frontier in understanding human and mammalian brain development
Nature 2025cited by 6position: middledoi
Exploring the correspondence between gene expression and thalamic nuclei using the THALMANAC resource
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 0position: middledoi
Corticosterone-linked microglial activity underpins sexually dimorphic neuroplasticity after ketamine anesthesia
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 0position: middledoi
A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types
bioRxiv (Cold Spring Harbor Laboratory) 2024cited by 22position: middledoi
Continuous cell type diversification throughout the embryonic and postnatal mouse visual cortex development
bioRxiv (Cold Spring Harbor Laboratory) 2024cited by 9position: middledoi
The transcriptomic and spatial organization of telencephalic GABAergic neuronal types
bioRxiv (Cold Spring Harbor Laboratory) 2024cited by 7position: firstdoi
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
eLife 2024cited by 5position: middledoi
Enhancer AAVs for targeting spinal motor neurons and descending motor pathways in rodents and macaque
bioRxiv (Cold Spring Harbor Laboratory) 2024cited by 5position: middledoi
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
eLife 2024cited by 2position: middledoi
Author Response: Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
2024cited by 0position: middledoi
Author Response: Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
2024cited by 0position: middledoi
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Nature 2023cited by 1,000position: middledoi
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 138position: middledoi
A guide to the BRAIN Initiative Cell Census Network data ecosystem
PLoS Biology 2023cited by 51position: middledoi
A transcriptomic taxonomy of mouse brain-wide spinal projecting neurons
Nature 2023cited by 48position: middledoi
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
eLife 2023cited by 17position: middledoi
Cell-type specific molecular signatures of aging revealed in a brain-wide transcriptomic cell-type atlas
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 9position: middledoi
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
2023cited by 5position: middledoi
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and <i>in situ</i> sequencing
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 2position: middledoi
The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide
bioRxiv (Cold Spring Harbor Laboratory) 2022cited by 7position: middledoi
A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation
Cell 2021cited by 1,128position: middledoi
A multimodal cell census and atlas of the mammalian primary motor cortex
Nature 2021cited by 564position: middledoi
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Nature 2021cited by 372position: middledoi
Enhancer viruses for combinatorial cell-subclass-specific labeling
Neuron 2021cited by 204position: middledoi
Isoform cell-type specificity in the mouse primary motor cortex
Nature 2021cited by 91position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Cobi J. Heijnen · The University of Texas Southwestern Medical Center10 papers (2012–2015)Annemieke Kavelaars · The University of Texas MD Anderson Cancer Center9 papers (2012–2015)Bosiljka Tasic · Allen Institute for Brain Science9 papers (2021–2025)Xiaoyin Chen · Allen Institute for Brain Science7 papers (2023–2024)Heather A. Sullivan · McGovern Institute for Brain Research7 papers (2023–2024)Aixin Zhang · Allen Institute for Brain Science7 papers (2023–2024)Shenqin Yao · Allen Institute for Brain Science7 papers (2023–2024)Makoto Matsuyama · Juntendo University7 papers (2023–2024)Manolis Kellis · Broad Institute7 papers (2023–2024)Na Sun · University of Baltimore7 papers (2023–2024)Lei Jin · Hohai University7 papers (2023–2024)Ian R. Wickersham · McGovern Institute for Brain Research7 papers (2023–2024)Frank van Bel · Utrecht University4 papers (2012–2015)Hanneke L.D.M. Willemen · University Medical Center Utrecht3 papers (2013–2013)Cora H. Nijboer · Utrecht University3 papers (2013–2015)Luca Braccioli · Utrecht University2 papers (2013–2013)Donna M. Ferriero · University of California, San Francisco2 papers (2013–2014)Hongkui Zeng · Allen Institute for Brain Science2 papers (2021–2025)Vanessa Donega · Utrecht University2 papers (2013–2015)Zinaida S. Vexler · University of California System2 papers (2013–2014)