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Xiaoyin Chen

Allen Institute for Brain Science · US
Area of research
Biophysics · Molecular Biology
Research interest
Research interests include Single-cell and spatial transcriptomics, Cell Image Analysis Techniques, Advanced Fluorescence Microscopy Techniques, and Neural dynamics and brain function.
h-index
16
citations
1,973
works
78
NIH funding
primary concept
email

Recent publications

Topographic structure and function of locus coeruleus norepinephrine neurons
bioRxiv (Cold Spring Harbor Laboratory) 2026cited by 0position: middledoi
The new frontier in understanding human and mammalian brain development
Nature 2025cited by 6position: middledoi
Cross-expression meta-analysis of mouse brain slices reveals coordinated gene expression across spatially adjacent cells
Genome biology 2025cited by 1position: middledoi
The xIV-LDDMM toolkit of image-varifold based technologies for mapping 3D images and spatial-omics across scales
Communications Biology 2025cited by 0position: middledoi
Whole-cortex in situ sequencing reveals input-dependent area identity
Nature 2024cited by 46position: firstdoi
Massive multiplexing of spatially resolved single neuron projections with axonal BARseq
Nature Communications 2024cited by 22position: middledoi
Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections
Nature Communications 2024cited by 7position: middledoi
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
eLife 2024cited by 5position: lastdoi
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
eLife 2024cited by 2position: lastdoi
Author Response: Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
2024cited by 0position: lastdoi
Author Response: Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
2024cited by 0position: lastdoi
Reimagining Cortical Connectivity by Deconstructing Its Molecular Logic into Building Blocks
Cold Spring Harbor Perspectives in Biology 2024cited by 0position: firstdoi
Cross-expression meta-analysis of 695 brain samples reveals coordinated gene expression across spatially adjacent cells
bioRxiv (Cold Spring Harbor Laboratory) 2024cited by 0position: middledoi
xIV-LDDMM Toolkit: A Suite of Image-Varifold Based Technologies for Representing and Mapping 3D Imaging and Spatial-omics Data Simultaneously Across Scales
bioRxiv (Cold Spring Harbor Laboratory) 2024cited by 0position: middledoi
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
eLife 2023cited by 17position: lastdoi
Massive Multiplexing of Spatially Resolved Single Neuron Projections with Axonal BARseq
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 8position: middledoi
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
2023cited by 5position: lastdoi
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and <i>in situ</i> sequencing
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 2position: lastdoi
BARseq - BARseq-styled in situ sequencing for barcoded rabies virus v1
2023cited by 1position: firstdoi
Whole-cortex in situ sequencing reveals peripheral input-dependent cell type-defined area identity
bioRxiv (Cold Spring Harbor Laboratory) 2022cited by 20position: firstdoi
Expansion Sequencing of RNA Barcoded Neurons in the Mammalian Brain: Progress and Implications for Molecularly Annotated Connectomics
bioRxiv (Cold Spring Harbor Laboratory) 2022cited by 2position: middledoi
BARseq - high-throughput cell typing with in situ sequencing v2
2022cited by 1position: firstdoi
Cellular anatomy of the mouse primary motor cortex
Nature 2021cited by 277position: middledoi
Cellular Anatomy of the Mouse Primary Motor Cortex
bioRxiv (Cold Spring Harbor Laboratory) 2020cited by 46position: middledoi
Automatic Wheat Leaf Rust Detection and Grading Diagnosis via Embedded Image Processing System
Procedia Computer Science 2017cited by 59position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Aixin Zhang · Allen Institute for Brain Science9 papers (2022–2024)Heather A. Sullivan · McGovern Institute for Brain Research7 papers (2023–2024)Shenqin Yao · Allen Institute for Brain Science7 papers (2023–2024)Makoto Matsuyama · Juntendo University7 papers (2023–2024)Manolis Kellis · Broad Institute7 papers (2023–2024)Na Sun · University of Baltimore7 papers (2023–2024)Lei Jin · Hohai University7 papers (2023–2024)Bosiljka Tasic · Allen Institute for Brain Science7 papers (2023–2024)Ian R. Wickersham · McGovern Institute for Brain Research7 papers (2023–2024)Cindy T. J. van Velthoven · Allen Institute for Brain Science7 papers (2023–2024) · 5 papers (2022–2024)Mara C.P. Rue · Allen Institute for Brain Science4 papers (2022–2025)Jesse Gillis · Canada Research Chairs4 papers (2022–2025)Laurent Younès · Johns Hopkins Medicine3 papers (2024–2025)Hongkui Zeng · Allen Institute for Brain Science3 papers (2024–2025)Michael I. Miller · Johns Hopkins University3 papers (2024–2025) · 3 papers (2024–2025) · 3 papers (2024–2025)Benjamin Charlier · Université de Montpellier2 papers (2024–2025) · 2 papers (2024–2025)