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Panagiotis I. Koukos

Utrecht University · NL
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Area of research
Molecular Biology · Computational Theory and Mathematics
Research interest
Research interests include Computer science, Docking (animal), Chemistry, Data science, Interface (matter), and Workflow.
h-index
citations
2,450
works
15
NIH funding
primary concept
email

Recent publications

The HADDOCK2.4 web server for integrative modeling of biomolecular complexes
Nature Protocols 2024cited by 479position: middledoi
Pathogen-sugar interactions revealed by universal saturation transfer analysis
Science 2022cited by 56position: middledoi
Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem
Florence Research (University of Florence) 2021cited by 768position: middledoi
Prediction of protein assemblies, the next frontier: The <scp>CASP14‐CAPRI</scp> experiment
Proteins Structure Function and Bioinformatics 2021cited by 125position: middledoi
Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem
Frontiers in Molecular Biosciences 2021cited by 37position: middledoi
Shape-Restrained Modeling of Protein–Small-Molecule Complexes with High Ambiguity Driven DOCKing
Journal of Chemical Information and Modeling 2021cited by 20position: firstdoi
Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment
Proteins Structure Function and Bioinformatics 2019cited by 140position: middledoi
Integrative Modelling of Biomolecular Complexes
Journal of Molecular Biology 2019cited by 100position: firstdoi
PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes
Bioinformatics 2019cited by 52position: middledoi
Large-scale prediction of binding affinity in protein–small ligand complexes: the PRODIGY-LIG web server
Bioinformatics 2018cited by 254position: middledoi
Protein–ligand pose and affinity prediction: Lessons from D3R Grand Challenge 3
Journal of Computer-Aided Molecular Design 2018cited by 39position: firstdoi
A Membrane Protein Complex Docking Benchmark
Journal of Molecular Biology 2018cited by 29position: firstdoi
Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2
Journal of Computer-Aided Molecular Design 2017cited by 139position: middledoi
Membrane proteins structures: A review on computational modeling tools
Biochimica et Biophysica Acta (BBA) - Biomembranes 2017cited by 113position: middledoi
SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots
Scientific Reports 2017cited by 99position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Alexandre M. J. J. Bonvin · Utrecht University12 papers (2017–2024)Jörg Schaarschmidt · Utrecht University4 papers (2017–2024)Mikaël Trellet · Utrecht University4 papers (2017–2024)Brian Jiménez‐García · Utrecht University4 papers (2019–2024)Irina S. Moreira · Utrecht University3 papers (2017–2017)Rodrigo V. Honorato · Utrecht University3 papers (2021–2024)Anna Vangone · Utrecht University3 papers (2017–2019)Li C. Xue · Radboud University Nijmegen3 papers (2017–2018) · 2 papers (2021–2021)João Rodrigues · Utrecht University2 papers (2017–2024) · 2 papers (2017–2017) · 2 papers (2021–2021)Cunliang Geng · Utrecht University2 papers (2017–2018)Nevia Citro · Utrecht University2 papers (2017–2018)José Guilherme de Almeida · European Bioinformatics Institute2 papers (2017–2017) · 2 papers (2021–2021)Jorge Roel‐Touris · Utrecht University2 papers (2017–2024)Adrien S. J. Melquiond · Utrecht University2 papers (2017–2024) · 2 papers (2021–2021)Charlotte W. van Noort · Utrecht University2 papers (2018–2024)
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