Area of research
Ecology · Molecular Biology
Research interest
Research interests include Microbial Community Ecology and Physiology, Genomics and Phylogenetic Studies, Bacteriophages and microbial interactions, and Marine and coastal ecosystems.
A roadmap for equitable reuse of public microbiome data
Author Correction: A roadmap for equitable reuse of public microbiome data
Microbial community composition predicts bacterial production across ocean ecosystems
Inter-comparison of marine microbiome sampling protocols
Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns
Evaluating and Improving Small Subunit rRNA PCR Primer Coverage for Bacteria, Archaea, and Eukaryotes Using Metagenomes from Global Ocean Surveys
Identifying viruses from metagenomic data using deep learning
Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences
Minimum Information about an Uncultivated Virus Genome (MIUViG)
Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling
A communal catalogue reveals Earth’s multiscale microbial diversity
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
CAFE: aCcelerated Alignment-FrEe sequence analysis
Prediction of virus-host infectious association by supervised learning methods
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom
Re-examination of the relationship between marine virus and microbial cell abundances
Alignment-free $d_2^*$ oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences
Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes
COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge
Every base matters: assessing small subunit <scp>rRNA</scp> primers for marine microbiomes with mock communities, time series and global field samples
Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
Marine microbial community dynamics and their ecological interpretation
A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes
The ocean sampling day consortium
Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains
Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists
Beyond biogeographic patterns: processes shaping the microbial landscape
Unlocking the potential of metagenomics through replicated experimental design
Global biogeography of SAR11 marine bacteria
Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series
Dimensions: Pattern and Process in Marine Bacterial, Archaeal, and Protistan Biodiversity, and Effects of Human Impacts
Marine viral dynamics and incorporation into microbial association networks
Experimentally linking identification and function of marine bacteria
Biogeochemical roles of planktonic archaea
Collaborative Research: Relating Microbial Biodiversity to Biological Oceanographic Processes
Viruses in marine food webs
Discovery and Characterization of Uncultivated Bacteria, Archaea and Protista from the San Pedro Channel Time Series
Survey of Marine Prokaryotes
Viruses in Marine Food Webs
Survey of Prokaryotic Marine Plankton
Viruses in Marine Food Webs
Survey of Prokaryotic Marine Plankton
Viruses in Marine Food Webs
Survey of Prokaryotic Marine Plankton
Novel Marine Archaebacteria: Potential Contribution to Midwater Biomass and Activity
Characterization of Culturable and Nonculturable Bacteria
Formation of Dissolved Free Amino Acids in Seawater and Its Coupling to Uptake
Formation of Dissolved Free Amino Acids in Seawater and Its Coupling to Uptake
Characterization of Culturable and Nonculturable Bacteria: A 16S rRNA Sequence Approach
Microbial Exchanges and Couplings in Coastal Atlantic Systems: Biological Program
Dissolved Free Amino Acid Formation in Seawater and Its Coupling to Uptake
Couplings Between Nutrients, Bacteria, and Bacteriovores in Estuarine Plumes
Bacterioplanktivores: Identification and Elucidation of Their Roles in Marine Food Webs
Dissolved Free Amino Acid Formation in Seawater and Its Coupling to Uptake