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Andreas Martin

QB3 ·
Area of research
Molecular Biology · Cell Biology
Research interest
Research interests include Ubiquitin and proteasome pathways, Endoplasmic Reticulum Stress and Disease, Autophagy in Disease and Therapy, and RNA and protein synthesis mechanisms.
h-index
47
citations
8,162
works
155
NIH funding
primary concept
email

Recent publications

NUB1 traps unfolded FAT10 for ubiquitin-independent degradation by the 26S proteasome
Nature Structural & Molecular Biology 2025cited by 11position: lastdoi
The deubiquitinase Rpn11 functions as an allosteric ubiquitin sensor to promote substrate engagement by the 26S proteasome
Cell Reports 2025cited by 8position: lastdoi
2024 VCP International Conference: Exploring multi-disciplinary approaches from basic science of valosin containing protein, an AAA+ ATPase protein, to the therapeutic advancement for VCP-associated multisystem proteinopathy
Neurobiology of Disease 2025cited by 6position: middledoi
Structural landscape of the degrading 26S proteasome reveals conformation-specific binding of TXNL1
Nature Structural & Molecular Biology 2025cited by 4position: lastdoi
Mechanisms and regulation of substrate degradation by the 26S proteasome
Nature Reviews Molecular Cell Biology 2024cited by 64position: lastdoi
The Ufd1 cofactor determines the linkage specificity of polyubiquitin chain engagement by the AAA+ ATPase Cdc48
Molecular Cell 2023cited by 36position: lastdoi
The N1 domain of the peroxisomal AAA-ATPase Pex6 is required for Pex15 binding and proper assembly with Pex1
Journal of Biological Chemistry 2023cited by 6position: middledoi
Preparation of site-specifically fluorophore-labeled polyubiquitin chains for FRET studies of Cdc48 substrate processing
STAR Protocols 2023cited by 1position: lastdoi
Ubiquitin modulates 26 <i>S</i> proteasome conformational dynamics and promotes substrate degradation
Science Advances 2022cited by 28position: lastdoi
High-Throughput Assay for Characterizing Rpn11 Deubiquitinase Activity
Methods in molecular biology 2022cited by 4position: lastdoi
A pentameric protein ring with novel architecture is required for herpesviral packaging
eLife 2021cited by 17position: middledoi
Proteasome interaction with ubiquitinated substrates: from mechanisms to therapies
FEBS Journal 2020cited by 64position: middledoi
Site-specific ubiquitination affects protein energetics and proteasomal degradation
Nature Chemical Biology 2020cited by 59position: middledoi
The AAA+ ATPase Msp1 is a processive protein translocase with robust unfoldase activity
Proceedings of the National Academy of Sciences 2020cited by 29position: lastdoi
The 26S Proteasome Utilizes a Kinetic Gateway to Prioritize Substrate Degradation
Cell 2019cited by 151position: lastdoi
Stairway to translocation: AAA+ motor structures reveal the mechanisms of ATP‐dependent substrate translocation
Protein Science 2019cited by 141position: lastdoi
The Cdc48 unfoldase prepares well-folded protein substrates for degradation by the 26S proteasome
Communications Biology 2019cited by 139position: lastdoi
Multisystem Proteinopathy Mutations in VCP/p97 Increase NPLOC4·UFD1L Binding and Substrate Processing
Structure 2019cited by 77position: lastdoi
Understanding the 26S proteasome molecular machine from a structural and conformational dynamics perspective
Current Opinion in Structural Biology 2019cited by 53position: lastdoi
Specific lid-base contacts in the 26s proteasome control the conformational switching required for substrate degradation
eLife 2019cited by 41position: lastdoi
Structure and Function of the 26S Proteasome
Annual Review of Biochemistry 2018cited by 830position: lastdoi
Substrate-engaged 26 <i>S</i> proteasome structures reveal mechanisms for ATP-hydrolysis–driven translocation
Science 2018cited by 328position: lastdoi
Mechanism for the Regulated Control of Bacterial Transcription Termination by a Universal Adaptor Protein
Molecular Cell 2018cited by 90position: middledoi
The peroxisomal AAA-ATPase Pex1/Pex6 unfolds substrates by processive threading
Nature Communications 2018cited by 65position: lastdoi
Recombinant Expression, Unnatural Amino Acid Incorporation, and Site-Specific Labeling of 26S Proteasomal Subcomplexes
Methods in molecular biology 2018cited by 23position: lastdoi
An AAA Motor-Driven Mechanical Switch in Rpn11 Controls Deubiquitination at the 26S Proteasome
Molecular Cell 2017cited by 114position: lastdoi
Knots can impair protein degradation by ATP-dependent proteases
Proceedings of the National Academy of Sciences 2017cited by 73position: middledoi
Atomic structure of the 26S proteasome lid reveals the mechanism of deubiquitinase inhibition
eLife 2016cited by 105position: middledoi
Substrate-translocating loops regulate mechanochemical coupling and power production in AAA+ protease ClpXP
Nature Structural & Molecular Biology 2016cited by 62position: lastdoi
The ClpXP Protease Unfolds Substrates Using a Constant Rate of Pulling but Different Gears
Cell 2013cited by 145position: middledoi

Grants

CAREER: Dissecting the Molecular Mechanisms of Substrate Selection and Degradation by the 26S Proteasome
NSF1150288$1,085,1762012–2017PIRePORTER

Frequent collaborators

Ken C. Dong · Howard Hughes Medical Institute13 papers (2017–2025)Gabriel C. Lander · University of California, Berkeley7 papers (2012–2023)Connor Arkinson · Howard Hughes Medical Institute5 papers (2023–2025)Jared A.M. Bard · Texas A&M University4 papers (2018–2022)Stephanie N. Gates · University of Michigan4 papers (2018–2021)Eric R. Greene · San Francisco State University4 papers (2018–2020)Christine L. Gee · QB33 papers (2024–2025)Piere Rodriguez-Aliaga · University of California, Berkeley3 papers (2013–2017)Dominic T. Castanzo · University of California System3 papers (2018–2023)Carlos Bustamante · QB33 papers (2013–2017)Zaw Min Htet · QB33 papers (2020–2025)Evan J. Worden · University of California, Berkeley3 papers (2016–2022)Cameron Williams · Franklin & Marshall College3 papers (2019–2023)Ellen A. Goodall · University of California, Berkeley3 papers (2018–2019)Charlene Bashore · University of California, Berkeley2 papers (2012–2019)Mary E. Matyskiela · Bristol-Myers Squibb (United States)2 papers (2012–2019)Saikat Chowdhury · Pennsylvania State University2 papers (2018–2023)Erik Jönsson · Howard Hughes Medical Institute2 papers (2018–2022)Brooke M. Gardner · University of California, Santa Barbara2 papers (2018–2023)Eva Nogales · Howard Hughes Medical Institute2 papers (2012–2013)