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Thomas Yu

Western University of Health Sciences ·
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Area of research
Radiology, Nuclear Medicine and Imaging · Cancer Research
Research interest
Research interests include Advanced MRI Techniques and Applications, Advanced Neuroimaging Techniques and Applications, Cancer Genomics and Diagnostics, and Natural Language Processing Techniques.
h-index
28
citations
6,262
works
171
NIH funding
primary concept
Medicine
email

Recent publications

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal
Cancer Research 2023cited by 818position: middledoi
AACR Project GENIE: 100,000 Cases and Beyond
Cancer Discovery 2022cited by 104position: middledoi
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI
NeuroImage 2022cited by 44position: middledoi
A Crowdsourcing Approach to Develop Machine Learning Models to Quantify Radiographic Joint Damage in Rheumatoid Arthritis
JAMA Network Open 2022cited by 24position: middledoi
Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?
NeuroImage 2021cited by 184position: middledoi
Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth
Cell Reports Medicine 2021cited by 106position: middledoi
Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees
Cell Systems 2021cited by 69position: middledoi
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery
Cell Systems 2021cited by 38position: middledoi
A Continuously Benchmarked and Crowdsourced Challenge for Rapid Development and Evaluation of Models to Predict COVID-19 Diagnosis and Hospitalization
JAMA Network Open 2021cited by 19position: middledoi
Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction
Cell 2020cited by 527position: middledoi
Evaluation of Combined Artificial Intelligence and Radiologist Assessment to Interpret Screening Mammograms
JAMA Network Open 2020cited by 409position: middledoi
Multiple Myeloma DREAM Challenge reveals epigenetic regulator PHF19 as marker of aggressive disease
Leukemia 2020cited by 53position: middledoi
Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics
Cell Systems 2020cited by 32position: middledoi
Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data
Life Science Alliance 2020cited by 25position: middledoi
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
Nature Communications 2019cited by 356position: middledoi
Multiple Myeloma DREAM Challenge Reveals Epigenetic Regulator <i>PHF19</i> As Marker of Aggressive Disease
bioRxiv (Cold Spring Harbor Laboratory) 2019cited by 1position: middledoi
Crowdsourced High-Risk Classifiers for Multiple Myeloma Patients Commonly Identify PHF19 As a Robust Progression Biomarker
Blood 2019cited by 0position: middledoi
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial data
The Lancet Oncology 2016cited by 143position: middledoi

Grants

Geometric Approximation and Variational Problems
NSF1913038$299,9992019–2025PIRePORTER
New Developments in Geometric and Multiscale Numerical Methods
NSF1522337$230,0002015–2019PIRePORTER
Topics in Geometric and Multiscale Numerical Methods
NSF1115915$230,8252011–2015PIRePORTER
Multiscale Modeling and Approximation in Novel Geometric and Nonlinear Settings
NSF0915068$175,5732009–2012PIRePORTER
Multiscale Data Representations in Geometric and Nonlinear Settings
NSF0542237$149,9822005–2009PIRePORTER
CAREER: Subdivision Schemes and Wavelets: New Tools, New Settings
NSF9984501$345,0002000–2006PIRePORTER

Frequent collaborators

Trevor J. Pugh · Ontario Institute for Cancer Research1 papers (2022–2022)Chaur‐Dong Hsu · University of Arizona1 papers (2021–2021) · 1 papers (2022–2022)Marilyn M. Li · Affiliated Hospital of Guizhou Medical University1 papers (2022–2022)Brady Bernard · Cancer Institute (WIA)1 papers (2022–2022)Marina Sirota · University of California, San Francisco1 papers (2021–2021)Michelle Green · LabCorp (United States)1 papers (2022–2022)Jeffrey P. Bruce · Princess Margaret Cancer Centre1 papers (2022–2022)Gaia Andreoletti · Sage Bionetworks1 papers (2021–2021)Sonia S. Hassan · University of Kentucky1 papers (2021–2021)Gustavo Stolovitzky · New York University1 papers (2021–2021)Tali Mazor · Dana-Farber Cancer Institute1 papers (2022–2022) · 1 papers (2022–2022) · 1 papers (2021–2021)Yuanfang Guan · University of Michigan–Ann Arbor1 papers (2021–2021) · 1 papers (2022–2022)Nardhy Gomez‐Lopez · Wayne State University1 papers (2021–2021) · 1 papers (2021–2021)Bogdan Done · Eunice Kennedy Shriver National Institute of Child Health and Human Development1 papers (2021–2021)Nima Aghaeepour · Palo Alto University1 papers (2021–2021)
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