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Jeffrey M. Granja

Enable Biosciences (United States) · US
🔎 Find collaborators in Molecular Biology · Cancer Research →
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Area of research
Molecular Biology · Cancer Research
Research interest
Research interests include Cancer Genomics and Diagnostics, Single-cell and spatial transcriptomics, Genomics and Chromatin Dynamics, and Glycosylation and Glycoproteins Research.
h-index
27
citations
10,751
works
59
NIH funding
primary concept
email

Recent publications

Three-dimensional genome landscape of primary human cancers
Nature Genetics 2025cited by 18position: middledoi
Single-cell chromatin accessibility reveals malignant regulatory programs in primary human cancers
Science 2024cited by 41position: middledoi
ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis
Nature Genetics 2021cited by 1,427position: firstdoi
ecDNA hubs drive cooperative intermolecular oncogene expression
Nature 2021cited by 328position: middledoi
Author Correction: ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis
Nature Genetics 2021cited by 45position: firstdoi
Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases
Nature Genetics 2020cited by 382position: middledoi
Chromatin Landscape Underpinning Human Dendritic Cell Heterogeneity
Cell Reports 2020cited by 36position: middledoi
Clonal replacement of tumor-specific T cells following PD-1 blockade
Nature Medicine 2019cited by 1,517position: middledoi
Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion
Nature Biotechnology 2019cited by 1,041position: middledoi
c-Jun overexpression in CAR T cells induces exhaustion resistance
Nature 2019cited by 877position: middledoi
Circular ecDNA promotes accessible chromatin and high oncogene expression
Nature 2019cited by 685position: middledoi
Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia
Nature Biotechnology 2019cited by 558position: firstdoi
GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways
Nature Communications 2019cited by 183position: middledoi
Cryptic activation of an Irf8 enhancer governs cDC1 fate specification
Nature Immunology 2019cited by 167position: middledoi
An Nfil3–Zeb2–Id2 pathway imposes Irf8 enhancer switching during cDC1 development
Nature Immunology 2019cited by 113position: middledoi
HiChIRP reveals RNA-associated chromosome conformation
Nature Methods 2019cited by 106position: middledoi
The chromatin accessibility landscape of primary human cancers
Science 2018cited by 1,316position: middledoi
Transcript-indexed ATAC-seq for precision immune profiling
Nature Medicine 2018cited by 161position: middledoi
Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements
Nature Genetics 2017cited by 553position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Howard Y. Chang · Amgen (United States)13 papers (2018–2025)Ansuman T. Satpathy · Stanford University8 papers (2018–2020)William J. Greenleaf · Stanford Medicine8 papers (2018–2025)M. Ryan Corces · Gladstone Institutes8 papers (2018–2025)Yanyan Qi · Stanford University4 papers (2018–2019)Maxwell R. Mumbach · Stanford University4 papers (2018–2020)Bryan H. Louie · University of California San Diego3 papers (2019–2025)Hani Choudhry · King Abdulaziz University3 papers (2021–2025)Kathryn E. Yost · Howard Hughes Medical Institute3 papers (2019–2025)S. Tansu Bagdatli · Stanford University3 papers (2020–2021)Sarah E. Pierce · Broad Institute3 papers (2019–2021) · 3 papers (2018–2019)Shadi Shams · UC San Diego Health System3 papers (2019–2025)Kenneth M. Murphy · Saint Louis University2 papers (2019–2019)Xiao Huang · Massachusetts Institute of Technology2 papers (2019–2019)Anne Lynn S. Chang · Stanford University Medical Center2 papers (2019–2019)Adam J. Rubin · Broad Institute2 papers (2018–2019)Grace Zheng · Sunnybrook Health Science Centre2 papers (2019–2019)Carlos G. Briseño · Washington University in St. Louis2 papers (2019–2019)Prachi Bagadia · FibroGen (United States)2 papers (2019–2019)
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