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Nikhil Wagle

Gene Therapy Laboratory · FR
Area of research
Cancer Research · Pulmonary and Respiratory Medicine
Research interest
Research interests include Cancer Genomics and Diagnostics, Advanced Breast Cancer Therapies, Melanoma and MAPK Pathways, and Breast Cancer Treatment Studies.
h-index
61
citations
22,559
works
597
NIH funding
primary concept
Medicine
email

Recent publications

SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data
Genome biology 2025cited by 1position: middledoi
Author Correction: A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Nature Medicine 2025cited by 0position: lastdoi
PACE: A Randomized Phase II Study of Fulvestrant, Palbociclib, and Avelumab After Progression on Cyclin-Dependent Kinase 4/6 Inhibitor and Aromatase Inhibitor for Hormone Receptor–Positive/Human Epidermal Growth Factor Receptor–Negative Metastatic Breast Cancer
Journal of Clinical Oncology 2024cited by 106position: middledoi
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Nature Medicine 2024cited by 70position: lastdoi
Exemestane plus everolimus and palbociclib in metastatic breast cancer: clinical response and genomic/transcriptomic determinants of resistance in a phase I/II trial
Nature Communications 2024cited by 26position: lastdoi
Adjuvant paclitaxel and trastuzumab for node-negative, HER2-positive breast cancer: final 10-year analysis of the open-label, single-arm, phase 2 APT trial
The Lancet Oncology 2023cited by 161position: middledoi
Abstract GS3-06: GS3-06 Palbociclib After CDK4/6i and Endocrine Therapy (PACE): A Randomized Phase II Study of Fulvestrant, Palbociclib, and Avelumab for Endocrine Pre-treated ER+/HER2- Metastatic Breast Cancer
Cancer Research 2023cited by 57position: middledoi
A Gene Panel Associated With Abemaciclib Utility in <i>ESR1</i>-Mutated Breast Cancer After Prior Cyclin-Dependent Kinase 4/6-Inhibitor Progression
JCO Precision Oncology 2023cited by 16position: middledoi
137P First-in-human results from a phase I dose-escalation study of VSV-GP (BI 1831169) in patients with advanced solid tumors
Immuno-Oncology Technology 2023cited by 1position: middledoi
Data from Hotspot &lt;i&gt;ESR1&lt;/i&gt; Mutations Are Multimodal and Contextual Modulators of Breast Cancer Metastasis
2023cited by 0position: middledoi
Hotspot <i>ESR1</i> Mutations Are Multimodal and Contextual Modulators of Breast Cancer Metastasis
Cancer Research 2022cited by 80position: middledoi
ESR1 mutant breast cancers show elevated basal cytokeratins and immune activation
Nature Communications 2022cited by 72position: middledoi
A patient-driven clinicogenomic partnership for metastatic prostate cancer
Cell Genomics 2022cited by 9position: middledoi
Abstract PD6-03: Spatio-molecular dissection of the breast cancer metastatic microenvironment
Cancer Research 2022cited by 1position: lastdoi
Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems
Science 2021cited by 410position: middledoi
Opposing immune and genetic mechanisms shape oncogenic programs in synovial sarcoma
Nature Medicine 2021cited by 123position: middledoi
Hotspot <i>ESR1</i> mutations are multimodal and contextual drivers of breast cancer metastasis
bioRxiv (Cold Spring Harbor Laboratory) 2021cited by 5position: middledoi
A patient-driven clinicogenomic partnership through the Metastatic Prostate Cancer Project
bioRxiv (Cold Spring Harbor Laboratory) 2021cited by 1position: middledoi
Recommendations for the use of next-generation sequencing (NGS) for patients with metastatic cancers: a report from the ESMO Precision Medicine Working Group
Annals of Oncology 2020cited by 1,173position: middledoi
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
Nature Medicine 2020cited by 790position: middledoi
The Genomic Landscape of Intrinsic and Acquired Resistance to Cyclin-Dependent Kinase 4/6 Inhibitors in Patients with Hormone Receptor–Positive Metastatic Breast Cancer
Cancer Discovery 2020cited by 427position: lastdoi
Prevalence and mutational determinants of high tumor mutation burden in breast cancer
Annals of Oncology 2020cited by 356position: lastdoi
The Angiosarcoma Project: enabling genomic and clinical discoveries in a rare cancer through patient-partnered research
Nature Medicine 2020cited by 270position: lastdoi
Sensitive Detection of Minimal Residual Disease in Patients Treated for Early-Stage Breast Cancer
Clinical Cancer Research 2020cited by 192position: middledoi
Acquired FGFR and FGF Alterations Confer Resistance to Estrogen Receptor (ER) Targeted Therapy in ER+ Metastatic Breast Cancer
Clinical Cancer Research 2020cited by 184position: lastdoi
Tumor Mutational Burden and <i>PTEN</i> Alterations as Molecular Correlates of Response to PD-1/L1 Blockade in Metastatic Triple-Negative Breast Cancer
Clinical Cancer Research 2020cited by 184position: middledoi
Author Correction: A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
Nature Medicine 2020cited by 30position: middledoi
Expansion Sequencing: Spatially Precise <i>In Situ</i> Transcriptomics in Intact Biological Systems
bioRxiv (Cold Spring Harbor Laboratory) 2020cited by 29position: middledoi
FOXA1 upregulation promotes enhancer and transcriptional reprogramming in endocrine-resistant breast cancer
Proceedings of the National Academy of Sciences 2019cited by 169position: middledoi
Real-time Genomic Characterization of Advanced Pancreatic Cancer to Enable Precision Medicine
Cancer Discovery 2018cited by 367position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Eliezer M. Van Allen · Harvard University9 papers (2013–2020)Levi A. Garraway · Cancer Research Center9 papers (2013–2015)Eric P. Winer · Yale University6 papers (2015–2020)Ofir Cohen · Broad Institute6 papers (2018–2025)Nancy U. Lin · San Francisco Art Institute6 papers (2015–2024)Esha Jain · University of Georgia4 papers (2020–2024)Sara M. Tolaney · Medidata (United States)3 papers (2020–2024)Romualdo Barroso‐Sousa · Universidade de Brasília3 papers (2020–2024)Orit Rozenblatt–Rosen · Broad Institute3 papers (2018–2025)Karla Helvie · Dana-Farber Cancer Institute3 papers (2018–2025)Gad Getz · Broad Institute3 papers (2014–2015)Jorge E. Buendia-Buendia · Dana-Farber Cancer Institute3 papers (2020–2024)Aviv Regev · Moscow Institute of Thermal Technology3 papers (2018–2025)Michael S. Cuoco · Broad Institute2 papers (2018–2020)Mothaffar F. Rimawi · Baylor College of Medicine2 papers (2015–2019)David E. Root · Broad Institute2 papers (2013–2020)Laura E. MacConaill · Brigham and Women's Hospital2 papers (2013–2020)Adrienne G. Waks · Harvard University2 papers (2018–2020)Daniel L. Abravanel · Harvard University2 papers (2024–2025)David M. Sabatini · Czech Academy of Sciences2 papers (2014–2014)